Detailed information of g340.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_115936340.1, translational GTPase TypA [Aestuariispira insulae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P44910Large ribosomal subunit assembly factor BipA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=bipA PE=1 SV=1
P0A3B2Large ribosomal subunit assembly factor BipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=bipA PE=1 SV=1
P0A3B3Large ribosomal subunit assembly factor BipA OS=Escherichia coli O157:H7 OX=83334 GN=bipA PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyIRF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00009GTP_EFTUElongation factor Tu GTP binding domainDomainInterproscan
PF00679EFG_CElongation factor G C-terminusDomainInterproscan
PF03144GTP_EFTU_D2Elongation factor Tu domain 2DomainInterproscan
PF21018BipA_CTypA/BipA C-terminal domainDomainInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan
PF04750Far-17a_AIG1FAR-17a/AIG1-like proteinFamilyInterproscan
PF00171AldedhAldehyde dehydrogenase familyFamilyInterproscan
PF00605IRFInterferon regulatory factor transcription factorDomainInterproscan
PF10401IRF-3Interferon-regulatory factor 3FamilyInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000795DomainTranslational (tr)-type GTP-binding domainInterproscan
IPR000640DomainElongation factor EFG, domain V-likeInterproscan
IPR004161DomainTranslation elongation factor EFTu-like, domain 2Interproscan
IPR048876DomainTypA/BipA, C-terminal domainInterproscan
IPR035651DomainBipA, domain VInterproscan
IPR047042DomainGTP-binding protein BipA, domain 2Interproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR031157Conserved_siteTr-type G domain, conserved siteInterproscan
IPR042116Homologous_superfamilyGTP-binding protein TypA/BipA, C-terminalInterproscan
IPR035647Homologous_superfamilyEF-G domain III/V-likeInterproscan
IPR006298FamilyGTP-binding protein BipAInterproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR048732FamilyCilia- and flagella-associated protein 69Interproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR006838FamilyADTRP/AIG1Interproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR015590DomainAldehyde dehydrogenase domainInterproscan
IPR016162Homologous_superfamilyAldehyde dehydrogenase, N-terminalInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001346DomainInterferon regulatory factor, DNA-binding domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR017855Homologous_superfamilySMAD-like domain superfamilyInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR019471DomainInterferon regulatory factor-3Interproscan
IPR019817Conserved_siteInterferon regulatory factor, conserved siteInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42908TRANSLATION ELONGATION FACTOR-RELATEDInterproscan
PTHR14716CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69Interproscan
PTHR46780PROTEIN EVA-1Interproscan
PTHR10989ANDROGEN-INDUCED PROTEIN 1-RELATEDInterproscan
PTHR11699ALDEHYDE DEHYDROGENASE-RELATEDInterproscan
PTHR11949INTERFERON REGULATORY FACTORInterproscan
PTHR36191ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0097225Cellular Componentsperm midpieceInterproscan
GO:0097730Cellular Componentnon-motile ciliumInterproscan
GO:1902093Biological Processpositive regulation of flagellated sperm motilityInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0004029Molecular Functionaldehyde dehydrogenase (NAD+) activityInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0002376Biological Processimmune system processInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09446IRF5; interferon regulatory factor 5-Signaling proteins-deepkoala
Transcription factorsko03000deepkoala

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