Genomic Location: not available for this species
NR annotation: XP_047124598.1, kinesin-II 95 kDa subunit [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P46871 | Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus OX=7668 GN=KRP95 PE=1 SV=1 |
| O15066 | Kinesin-like protein KIF3B OS=Homo sapiens OX=9606 GN=KIF3B PE=1 SV=1 |
| Q61771 | Kinesin-like protein KIF3B OS=Mus musculus OX=10090 GN=Kif3b PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000082 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000378 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000634 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000702 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001119 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001831 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007571 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007849 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0033343 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15882 all species → | DUF4735 | Domain of unknown function (DUF4735) | Family | Interproscan |
| PF07707 all species → | BACK | BTB And C-terminal Kelch | Domain | Interproscan |
| PF00001 all species → | 7tm_1 | 7 transmembrane receptor (rhodopsin family) | Family | Interproscan |
| PF02210 all species → | Laminin_G_2 | Laminin G domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031751 all species → | Family | Protein of unknown function DUF4735 | Interproscan |
| IPR042846 all species → | Family | BTB/POZ domain-containing protein 19 | Interproscan |
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR011705 all species → | Domain | BTB/Kelch-associated | Interproscan |
| IPR036045 all species → | Homologous_superfamily | Sec1-like superfamily | Interproscan |
| IPR026060 all species → | Family | Associate of Myc 1 | Interproscan |
| IPR050125 all species → | Family | G-protein coupled receptor opsins | Interproscan |
| IPR017452 all species → | Domain | GPCR, rhodopsin-like, 7TM | Interproscan |
| IPR000276 all species → | Family | G protein-coupled receptor, rhodopsin-like | Interproscan |
| IPR001791 all species → | Domain | Laminin G domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33539 all species → | UPF0764 PROTEIN C16ORF89 | Interproscan |
| PTHR46965 all species → | BTB/POZ DOMAIN-CONTAINING PROTEIN 19 | Interproscan |
| PTHR13168 all species → | ASSOCIATE OF C-MYC AMY-1 | Interproscan |
| PTHR24240 all species → | OPSIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0001750 all species → | Cellular Component | photoreceptor outer segment | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007186 all species → | Biological Process | G protein-coupled receptor signaling pathway | Interproscan |
| GO:0007602 all species → | Biological Process | phototransduction | Interproscan |
| GO:0008020 all species → | Molecular Function | G protein-coupled photoreceptor activity | Interproscan |
| GO:0071482 all species → | Biological Process | cellular response to light stimulus | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
g341.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
