Detailed information of g343.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_048588534.1, DNA repair protein XRCC4 isoform X2 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P55115Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans OX=6239 GN=nas-15 PE=2 SV=2
Q20191Zinc metalloproteinase nas-13 OS=Caenorhabditis elegans OX=6239 GN=nas-13 PE=2 SV=5
P55112Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18055RPN6_N26S proteasome regulatory subunit RPN6 N-terminal domainRepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF06632XRCC4DNA double-strand break repair and V(D)J recombination protein XRCC4FamilyInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF00082Peptidase_S8Subtilase familyDomainInterproscan
PF16470S8_pro-domainPeptidase S8 pro-domainDomainInterproscan
PF01483P_proproteinProprotein convertase P-domainFamilyInterproscan
PF00305LipoxygenaseLipoxygenaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040773Domain26S proteasome regulatory subunit Rpn6, N-terminalInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR014751Homologous_superfamilyDNA repair protein XRCC4-like, C-terminalInterproscan
IPR010585FamilyDNA repair protein XRCC4Interproscan
IPR038051Homologous_superfamilyXRCC4-like, N-terminal domain superfamilyInterproscan
IPR009089Homologous_superfamilyXRCC4, N-terminal domain superfamilyInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR012548FamilyMicrotubule-associated tyrosine carboxypeptidaseInterproscan
IPR022398Active_sitePeptidase S8, subtilisin, His-active siteInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR034182DomainKexin/furin catalytic domainInterproscan
IPR036852Homologous_superfamilyPeptidase S8/S53 domain superfamilyInterproscan
IPR023827Active_sitePeptidase S8, subtilisin, Asp-active siteInterproscan
IPR000209DomainPeptidase S8/S53 domainInterproscan
IPR023828Active_sitePeptidase S8, subtilisin, Ser-active siteInterproscan
IPR015500FamilyPeptidase S8, subtilisin-relatedInterproscan
IPR038466Homologous_superfamilyPeptidase S8, pro-domain superfamilyInterproscan
IPR002884DomainP domainInterproscan
IPR032815DomainPeptidase S8, pro-domainInterproscan
IPR000907FamilyLipoxygenaseInterproscan
IPR013819DomainLipoxygenase, C-terminalInterproscan
IPR036226Homologous_superfamilyLipoxigenase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR28559DNA REPAIR PROTEIN XRCC4Interproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR31817-Interproscan
PTHR42884PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATEDInterproscan
PTHR11771LIPOXYGENASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0010165Biological Processresponse to X-rayInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan
GO:0051351Biological Processpositive regulation of ligase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0030173Cellular Componentobsolete integral component of Golgi membraneInterproscan
GO:0008236Molecular Functionserine-type peptidase activityInterproscan
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenInterproscan
GO:0034440Biological Processlipid oxidationInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02905RP-L29e, RPL29; large subunit ribosomal protein L29e-DNA repair and recombination proteinsko03400deepkoala
Chaperones and folding catalystsko03110deepkoala
Ribosomeko03011deepkoala

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