Detailed information of g344.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3179601.1, unnamed protein product, partial [Porites evermanni]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6UZF7Large ribosomal subunit protein uL29 OS=Hippocampus comes OX=109280 GN=rpl35 PE=2 SV=3
Q6PBC1Large ribosomal subunit protein uL29 OS=Xenopus tropicalis OX=8364 GN=rpl35 PE=2 SV=3
Q5DVH6Large ribosomal subunit protein uL29 OS=Platichthys flesus OX=8260 GN=rpl35 PE=2 SV=3
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03137OATPOrganic Anion Transporter Polypeptide (OATP) familyFamilyInterproscan
PF13343SBP_bac_6Bacterial extracellular solute-binding proteinFamilyInterproscan
PF00650CRAL_TRIOCRAL/TRIO domainDomainInterproscan
PF07910Peptidase_C78Peptidase family C78FamilyInterproscan
PF10744Med1Mediator of RNA polymerase II transcription subunit 1DomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00831Ribosomal_L29Ribosomal L29 proteinFamilyInterproscan
PF02270TFIIF_betaTFIIF, beta subunit HTH domainDomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004156FamilyOrganic anion transporter polypeptideInterproscan
IPR012548FamilyMicrotubule-associated tyrosine carboxypeptidaseInterproscan
IPR036865Homologous_superfamilyCRAL-TRIO lipid binding domain superfamilyInterproscan
IPR001251DomainCRAL-TRIO lipid binding domainInterproscan
IPR052578FamilyPhosphatidylinositol Transfer CRAL-TRIO Domain-Containing ProteinInterproscan
IPR038051Homologous_superfamilyXRCC4-like, N-terminal domain superfamilyInterproscan
IPR012462DomainUfSP1/2/DUB, catalytic domainInterproscan
IPR051250FamilyUFM1-specific isopeptidaseInterproscan
IPR019680DomainMediator complex, subunit Med1Interproscan
IPR051999FamilyMediator complex subunit 1Interproscan
IPR038028FamilyNucleosome-remodeling factor subunit BPTFInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR001854FamilyLarge ribosomal subunit protein uL29Interproscan
IPR045059FamilyLarge ribosomal subunit protein uL29, eukaryotesInterproscan
IPR018254Conserved_siteLarge ribosomal subunit protein uL29, conserved siteInterproscan
IPR036049Homologous_superfamilyLarge ribosomal subunit protein uL29 superfamilyInterproscan
IPR003196FamilyTranscription initiation factor IIF, beta subunitInterproscan
IPR011039Homologous_superfamilyTranscription Factor IIF, Rap30/Rap74, interactionInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR040450DomainTFIIF beta subunit, HTH domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR039133FamilyE3 ubiquitin-protein ligase RNF25Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11388ORGANIC ANION TRANSPORTERInterproscan
PTHR31817-Interproscan
PTHR30006THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATEDInterproscan
PTHR45824GH16843PInterproscan
PTHR48153UFM1-SPECIFIC PROTEASE 2Interproscan
PTHR12881MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1Interproscan
PTHR45975NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan
PTHR4572260S RIBOSOMAL PROTEIN L35Interproscan
PTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2Interproscan
PTHR13198RING FINGER PROTEIN 25Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0006810Biological ProcesstransportInterproscan
GO:0030288Cellular Componentouter membrane-bounded periplasmic spaceInterproscan
GO:0008526Molecular Functionphosphatidylinositol transfer activityInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0016589Cellular ComponentNURF complexInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0005674Cellular Componenttranscription factor TFIIF complexInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02012afuA, fbpA; iron(III) transport system substrate-binding protein-Ribosomeko03011deepkoala
Transcription machineryko03021deepkoala
Transportersko02000deepkoala

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