Detailed information of g347.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_010873211.2, lysine-specific demethylase 8 isoform X1 [Esox lucius]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5XF11Lysine-specific demethylase 8 OS=Salmo salar OX=8030 GN=kdm8 PE=2 SV=1
Q1JP61Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Bos taurus OX=9913 GN=KDM8 PE=2 SV=1
Q8N371Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Homo sapiens OX=9606 GN=KDM8 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|UBA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00579tRNA-synt_1btRNA synthetases class I (W and Y)FamilyInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan
PF00627UBAUBA/TS-N domainDomainInterproscan
PF00136DNA_pol_BDNA polymerase family BFamilyInterproscan
PF01221Dynein_lightDynein light chain type 1 DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050203FamilyTryptophan--tRNA ligaseInterproscan
IPR002305FamilyAminoacyl-tRNA synthetase, class IcInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR002306FamilyTryptophan-tRNA ligaseInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR003347DomainJmjC domainInterproscan
IPR041667DomainCupin-like domain 8Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR045071FamilyKH domain-containing BBP-likeInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR039749FamilyNEDD8 ultimate buster 1Interproscan
IPR023211Homologous_superfamilyDNA polymerase, palm domain superfamilyInterproscan
IPR006172FamilyDNA-directed DNA polymerase, family BInterproscan
IPR006134DomainDNA-directed DNA polymerase, family B, multifunctional domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR029703FamilyDNA polymerase epsilon catalytic subunitInterproscan
IPR019763Conserved_siteDynein light chain, type 1/2, conserved siteInterproscan
IPR001372FamilyDynein light chain, type 1/2Interproscan
IPR037177Homologous_superfamilyDynein light chain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR43766TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIALInterproscan
PTHR12461HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATEDInterproscan
PTHR11208RNA-BINDING PROTEIN RELATEDInterproscan
PTHR12948NEDD8 ULTIMATE BUSTER-1 BS4 PROTEINInterproscan
PTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT AInterproscan
PTHR11886DYNEIN LIGHT CHAINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004830Molecular Functiontryptophan-tRNA ligase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0006436Biological Processtryptophanyl-tRNA aminoacylationInterproscan
GO:0070183Biological Processmitochondrial tryptophanyl-tRNA aminoacylationInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0051864Molecular Functionhistone H3K36 demethylase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0048024Biological Processregulation of mRNA splicing, via spliceosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:2000058Biological Processregulation of ubiquitin-dependent protein catabolic processInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006272Biological Processleading strand elongationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006287Biological Processbase-excision repair, gap-fillingInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0008310Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0008622Cellular Componentepsilon DNA polymerase complexInterproscan
GO:0045004Biological ProcessDNA replication proofreadingInterproscan
GO:0005875Cellular Componentmicrotubule associated complexInterproscan
GO:0007017Biological Processmicrotubule-based processInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0005868Cellular Componentcytoplasmic dynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10418DYNLL; dynein light chain LC8-type-Ribosome biogenesisko03009deepkoala
Cytoskeleton proteinsko04812deepkoala

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