Detailed information of g34796.t1 in Montipora capitata

Genomic Location: xpSc0028468:49891...61431
NR annotation: XP_015763721.1, PREDICTED: T-complex protein 1 subunit zeta-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for g34796.t1 in MCAPI (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3MHL7T-complex protein 1 subunit zeta OS=Bos taurus OX=9913 GN=CCT6A PE=1 SV=3
P40227T-complex protein 1 subunit zeta OS=Homo sapiens OX=9606 GN=CCT6A PE=1 SV=3
P80317T-complex protein 1 subunit zeta OS=Mus musculus OX=10090 GN=Cct6a PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004779 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00118
all species →		Cpn60_TCP1TCP-1/cpn60 chaperonin familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012722
all species →		FamilyT-complex protein 1, zeta subunitInterproscan
IPR027410
all species →		Homologous_superfamilyTCP-1-like chaperonin intermediate domain superfamilyInterproscan
IPR002194
all species →		Conserved_siteChaperonin TCP-1, conserved siteInterproscan
IPR027409
all species →		Homologous_superfamilyGroEL-like apical domain superfamilyInterproscan
IPR002423
all species →		FamilyChaperonin Cpn60/GroEL/TCP-1 familyInterproscan
IPR017998
all species →		FamilyChaperone tailless complex polypeptide 1 (TCP-1)Interproscan
IPR053374
all species →		FamilyTCP-1 chaperonin-containing T-complexInterproscan
IPR027413
all species →		Homologous_superfamilyGroEL-like equatorial domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11353
all species →		CHAPERONINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006457
all species →		Biological Processprotein foldingInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0051082
all species →		Molecular Functionunfolded protein bindingInterproscan
GO:0005832
all species →		Cellular Componentchaperonin-containing T-complexInterproscan
GO:0140662
all species →		Molecular FunctionATP-dependent protein folding chaperoneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09498CCT6; T-complex protein 1 subunit zeta-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g34796.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
48TPM > 0
3Conditions
343.8Max TPM
162.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 21 167.57 343.79
whole organisms · low pH treatment 15 15 158.62 300.90
whole organisms · extra low pH treatment pH treatment 12 12 157.13 309.41

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11452263 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 343.79
SRR11452240 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 315.07
SRR11452251 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 313.61
SRR11452262 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 304.23
SRR11452217 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 267.60
SRR11452232 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 199.37
SRR11452231 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 187.92
SRR11452230 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 149.29
SRR11452228 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 145.91
SRR11452250 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 134.37
SRR11452260 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 125.00
SRR11452243 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 122.03
SRR11452246 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 116.15
SRR11452252 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 113.39
SRR11452254 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 107.82
SRR11452237 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 102.83
SRR11452259 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 102.82
SRR11452234 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 102.56
SRR11452222 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 100.53
SRR11452242 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 94.55
SRR11452233 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 70.26
SRR11452218 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 300.90
SRR11452229 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 291.94
SRR11452216 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 289.79
SRR11452221 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 172.76
SRR11452224 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 146.93
SRR11452223 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 144.30
SRR11452255 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 140.75
SRR11452249 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 139.80
SRR11452253 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 120.10
SRR11452247 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 110.82
SRR11452236 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 108.63
SRR11452241 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 107.22
SRR11452245 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 106.42
SRR11452238 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 101.29
SRR11452258 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 97.67
SRR11452261 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 309.41
SRR11452220 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 278.35
SRR11452219 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 250.16
SRR11452225 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 146.47
SRR11452226 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 132.18
SRR11452227 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 124.05
SRR11452244 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 114.92
SRR11452248 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 114.64
SRR11452256 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 113.97
SRR11452235 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 105.21
SRR11452239 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 103.43
SRR11452257 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 92.74

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora capitata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated20g27359.t10.942588279056674
Negatively correlated14g16621.t1-0.917673264559031

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora capitata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.not in the sequence tableopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.not in the sequence tableopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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