Detailed information of g348.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032220991.2, DNA-binding protein RFX6 isoform X4 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
D2HNW6DNA-binding protein RFX6 OS=Ailuropoda melanoleuca OX=9646 GN=RFX6 PE=3 SV=2
Q8C7R7DNA-binding protein RFX6 OS=Mus musculus OX=10090 GN=Rfx6 PE=1 SV=2
Q8HWS3DNA-binding protein RFX6 OS=Homo sapiens OX=9606 GN=RFX6 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyRFX

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16575CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02257RFX_DNA_bindingRFX DNA-binding domainDomainInterproscan
PF07522DRMBLDNA repair metallo-beta-lactamaseDomainInterproscan
PF01839FG-GAPFG-GAP repeatRepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032319DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan
IPR045116FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR003150DomainDNA-binding RFX-type winged-helix domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR039779FamilyRFX-like DNA-binding proteinInterproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR011084DomainDNA repair metallo-beta-lactamaseInterproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR013517RepeatFG-GAP repeatInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR050374FamilyRRT5/SRSF/Splicing Factor SRInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR12619RFX TRANSCRIPTION FACTOR FAMILYInterproscan
PTHR23240DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATEDInterproscan
PTHR46580SENSOR KINASE-RELATEDInterproscan
PTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0051731Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0035312Molecular Function5'-3' DNA exonuclease activityInterproscan
GO:0036297Biological Processinterstrand cross-link repairInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12890SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1-Transcription factorsko03000deepkoala
Spliceosomeko03041deepkoala

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