Detailed information of g349.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022789460.1, E3 ubiquitin-protein ligase RFWD3-like [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A0A974CYQ5E3 ubiquitin-protein ligase rfwd3.S OS=Xenopus laevis OX=8355 GN=rfwd3.S PE=1 SV=1
A0A1L8GLK3E3 ubiquitin-protein ligase rfwd3.L OS=Xenopus laevis OX=8355 GN=rfwd3.L PE=1 SV=1
D2HWM5E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca OX=9646 GN=RFWD3 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01762Galactosyl_TGalactosyltransferaseFamilyInterproscan
PF13735tRNA_NucTran2_2tRNA nucleotidyltransferase domain 2 putativeDomainInterproscan
PF12627PolyA_pol_RNAbdProbable RNA and SrmB- binding site of polymerase ADomainInterproscan
PF01743PolyA_polPoly A polymerase head domainDomainInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan
PF00801PKDPKD domainDomainInterproscan
PF02010REJREJ domainFamilyInterproscan
PF00617RasGEFRasGEF domainFamilyInterproscan
PF00169PHPH domainDomainInterproscan
PF00589Phage_integrasePhage integrase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002659FamilyGlycosyl transferase, family 31Interproscan
IPR050264FamilyBacterial CCA-adding enzyme type 3 subfamilyInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR002646DomainPoly A polymerase, head domainInterproscan
IPR032810DomainCCA-adding enzyme, C-terminalInterproscan
IPR032828DomaintRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domainInterproscan
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR002418FamilyTranscription regulator MycInterproscan
IPR050433FamilyMyc family transcription factorsInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR028288FamilySCAR/WAVE familyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR037381FamilyE3 ubiquitin-protein ligase RFWD3Interproscan
IPR001680RepeatWD40 repeatInterproscan
IPR000601DomainPKD domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR022409DomainPKD/Chitinase domainInterproscan
IPR035986Homologous_superfamilyPKD domain superfamilyInterproscan
IPR002859DomainPKD/REJ-like domainInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR008937FamilyRas-like guanine nucleotide exchange factorInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001895DomainRas guanine-nucleotide exchange factors catalytic domainInterproscan
IPR036964Homologous_superfamilyRas guanine-nucleotide exchange factor, catalytic domain superfamilyInterproscan
IPR023578Homologous_superfamilyRas guanine nucleotide exchange factor domain superfamilyInterproscan
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR002104DomainIntegrase, catalytic domainInterproscan
IPR052787FamilyMitochondrial antiviral-signaling domain-containing proteinInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11214BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASEInterproscan
PTHR46173CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIALInterproscan
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan
PTHR45851MYC PROTO-ONCOGENEInterproscan
PTHR12902WASP-1Interproscan
PTHR16047RFWD3 PROTEINInterproscan
PTHR46730POLYCYSTIN-1Interproscan
PTHR23113GUANINE NUCLEOTIDE EXCHANGE FACTORInterproscan
PTHR21446DUF3504 DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0006024Biological Processglycosaminoglycan biosynthetic processInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016758Molecular Functionhexosyltransferase activityInterproscan
GO:0035250Molecular FunctionUDP-galactosyltransferase activityInterproscan
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0001680Biological ProcesstRNA 3'-terminal CCA additionInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:1990180Biological Processmitochondrial tRNA 3'-end processingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0031209Cellular ComponentSCAR complexInterproscan
GO:0034237Molecular Functionprotein kinase A regulatory subunit bindingInterproscan
GO:0071933Molecular FunctionArp2/3 complex bindingInterproscan
GO:2000601Biological Processpositive regulation of Arp2/3 complex-mediated actin nucleationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0036297Biological Processinterstrand cross-link repairInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0006816Biological Processcalcium ion transportInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0007265Biological ProcessRas protein signal transductionInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00734B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferaseEC:2.4.1.134
Ubiquitin systemko04121deepkoala
Glycosyltransferasesko01003deepkoala

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