Gene detail

Detailed information of g35.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCP4394036.1, hypothetical protein [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8ZS00	Aldo-keto reductase MLBr01669 OS=Mycobacterium leprae (strain Br4923) OX=561304 GN=MLBr01669 PE=3 SV=1
O69462	Aldo-keto reductase ML1669 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1669 PE=3 SV=1
B2HIJ9	Aldo-keto reductase MMAR_1744 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=216594 GN=MMAR_1744 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000083 (this species only)
Orthogroup (gene family)	OG0000732 (this species only)
Orthogroup (gene family)	OG0001351 (this species only)
Orthogroup (gene family)	OG0001912 (this species only)
Orthogroup (gene family)	OG0002285 (this species only)
Orthogroup (gene family)	OG0003051 (this species only)
Orthogroup (gene family)	OG0005180 (this species only)
Orthogroup (gene family)	OG0009794 (this species only)
Orthogroup (gene family)	OG0016086 (this species only)
Orthogroup (gene family)	OG0170681 (this species only)
Orthogroup (gene family)	OG0172106 (this species only)
Orthogroup (gene family)	OG0172392 (this species only)
Orthogroup (gene family)	OG0172725 (this species only)
Orthogroup (gene family)	OG0172852 (this species only)
Orthogroup (gene family)	OG0173689 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF05602 all species →	CLPTM1	Cleft lip and palate transmembrane protein 1 (CLPTM1)	Family	Interproscan
PF05396 all species →	Phage_T7_Capsid	Phage T7 capsid assembly protein	Family	Interproscan
PF00318 all species →	Ribosomal_S2	Ribosomal protein S2	Family	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR050125 all species →	Family	G-protein coupled receptor opsins	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR042411 all species →	Family	WD repeat-containing protein 27	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR008429 all species →	Family	Cleft lip and palate transmembrane 1	Interproscan
IPR008768 all species →	Family	Capsid assembly scaffolding protein-like	Interproscan
IPR001865 all species →	Family	Small ribosomal subunit protein uS2	Interproscan
IPR023591 all species →	Homologous_superfamily	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Interproscan
IPR018130 all species →	Conserved_site	Small ribosomal subunit protein uS2, conserved site	Interproscan
IPR005706 all species →	Family	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR039353 all species →	Family	Transcription factor Adf-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012 all species →	RNA BINDING PROTEIN	Interproscan
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan
PTHR24240 all species →	OPSIN	Interproscan
PTHR44525 all species →	WD REPEAT-CONTAINING PROTEIN 27	Interproscan
PTHR21347 all species →	CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED	Interproscan
PTHR12534 all species →	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	Interproscan
PTHR12243 all species →	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006376 all species →	Biological Process	mRNA splice site recognition	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007602 all species →	Biological Process	phototransduction	Interproscan
GO:0008020 all species →	Molecular Function	G protein-coupled photoreceptor activity	Interproscan
GO:0071482 all species →	Biological Process	cellular response to light stimulus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0019069 all species →	Biological Process	viral capsid assembly	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02967	RP-S2, MRPS2, rpsB; small subunit ribosomal protein S2	-	Ribosome	ko03011	deepkoala
K08375	NPFFR2; neuropeptide FF receptor 2	-	G protein-coupled receptors	ko04030	deepkoala
K14842	NSA2; ribosome biogenesis protein NSA2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.