Detailed information of g350.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ7380997.1, PHD finger protein 13 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8K2W6PHD finger protein 13 OS=Mus musculus OX=10090 GN=Phf13 PE=2 SV=2
Q86YI8PHD finger protein 13 OS=Homo sapiens OX=9606 GN=PHF13 PE=1 SV=2
Q5U5E5PHD finger protein 23A OS=Xenopus tropicalis OX=8364 GN=phf23 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08609Fes1Nucleotide exchange factor Fes1RepeatInterproscan
PF00890FAD_binding_2FAD binding domainFamilyInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF00171AldedhAldehyde dehydrogenase familyFamilyInterproscan
PF20826PHD_5PhD finger domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00864P2X_receptorATP P2X receptorFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR050693FamilyHsp70 Nucleotide Exchange Factors and InhibitorsInterproscan
IPR013918DomainNucleotide exchange factor Fes1Interproscan
IPR052542FamilyCholesterol Oxidase EnzymeInterproscan
IPR003953DomainFAD-dependent oxidoreductase 2, FAD binding domainInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR016162Homologous_superfamilyAldehyde dehydrogenase, N-terminalInterproscan
IPR016163Homologous_superfamilyAldehyde dehydrogenase, C-terminalInterproscan
IPR015590DomainAldehyde dehydrogenase domainInterproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052304FamilyPituitary tumor-transforming gene 1 protein-interactingInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR052415FamilyDiphthine methyltransferaseInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR046432FamilyTASORInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19316PROTEIN FOLDING REGULATORInterproscan
PTHR47470CHOLESTEROL OXIDASEInterproscan
PTHR11699ALDEHYDE DEHYDROGENASE-RELATEDInterproscan
PTHR14571UNCHARACTERIZEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR15191PROTEIN CBG20567Interproscan
PTHR46042DIPHTHINE METHYLTRANSFERASEInterproscan
PTHR16207UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000774Molecular Functionadenyl-nucleotide exchange factor activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0017183Biological Processprotein histidyl modification to diphthamideInterproscan
GO:0061685Molecular Functiondiphthine methylesterase activityInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0045814Biological Processnegative regulation of gene expression, epigeneticInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17868DPH7, RRT2; diphthine methyl ester acylhydrolaseEC:3.1.1.97
Membrane traffickingko04131deepkoala
Chaperones and folding catalystsko03110deepkoala
Translation factorsko03012deepkoala

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