Gene detail

Detailed information of g3592.t1 in Montipora capitata

Genomic Location: Sc0000062:117990...136532
NR annotation: XP_029207824.2, sodium/potassium-transporting ATPase subunit alpha-1-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3592.t1

atgagcaaggcaaagggagcgaaggggtcatcagaggagaaagagaatctgtttggaaggagccaaagttatcgtgtggctacaactccactcgtcgatgatggctccaaagccaaaaaagcggacaagaaatcgaagaagaaagagaaaaaagaaaacttagaagagctaaaaaaggagttagaaattgattggcatacgatctccttggaagaagtcttaactcgtttggagacgaatgttgaaacgggtctatcgaaggaaaaagctgaagaaattctgaaacgtgatggtcccaatgcattgacccccccacctaccacccctgagtgggtcaagttttgtaaacaattgtttggagggtttgctatgctgctatgggtaggatcagttctctgttttgtggcccatggtattcttttagctacagaggaagatccagctagtgataatttatatcttggagttgtgttagctcttgtggttatcgtcactggtattttctcgtactaccaggaagccaagagctccagaatcatggaaagtttcaagaatttggttcctcaggaagcacatgtgctacgtggtggtgaacggtatacaatcaatgcagaagaagtggttgtgggtgatattatttttgtcaaaggtggtgataggattccggctgatatcagagtagtggaagctagaggatttaaggttgacaattcatcgctgactggtgaatctgaaccccaaagccgtggtcctgactgtaccaatgaaaatcctttggaaaccaggaacattgctttcttctctacgaatgggctggaaggcaattgtattggcatcgctgtccaaacaggggataacactgtgatgggacgtattgctaatttggctagtggtctaggaagtgacaaaactccaattgctattgagattgagcatttcatacacatcattactggtgttgctgtttttcttggagtatcgttttttatcattgcattcatcctgcagtacatctggattgaggctgtcatctttttgattggtattattgtggctaatgttcctgaaggtcttctggcgactgtcacagtgtgtttgactctcactgcaaaaaggatggcatccaaaaactgcttggtgaagaatcttgaggctgtagaaacgcttggtagcacatcaaccatctgttcagataagacaggaacactgacgcaaaacagaatgacagttgctcacatgtggtttgatagcacaattattgaagctgatacaacagaggatcaatccggagtatcattcgataagacatccaacacatggaaagctctggcccgcatcgcaggactgtgtaacagagcagtctttaaggcagatcaggaccacattcctattctaaagagggattgctctggagatgcgtcagaatctgctttaatgaagtatgttgagctgtcagagggcagcgtcaaagacatgagagagagttacaagaaggttgcagaaattcctttcaactccactaataagtatcaagtgtcaattcatgaaaatgcagatccagaggacaagcgataccttttggttatgaagggtgcacctgagagaattttggacagatgttcaacaatcatgataaatggagaagtacttgagctggatgagaagatgcaagaggctttcaacacagcgtaccttgagcttggaggcatgggggagcgtgttcttggtttttgtcaatgtctactgcccttggaagagtttccagaaggttttgaatttgttactgatgagcctcccaatttccctctcgaaaacttgtgttttgtcggtttgatgtccatgattgatcctcctcgtgcagctgtacctgatgcagttagcaagtgccgtagtgcgggaattaaagtcattatggtgactggtgatcatcctatcacagctaaagctattgctaaaggcgttggaatcatttctgaaggaactgagaccaaggaggatgttgcagctcgcctgaatatccctgtagaagaagttgaccctagaatggctaaagccattgttgttcatggctcacagttgaaggacatgaagagagacgacattgatgagattctgtcataccatacagagattgttttcgcccgaacatcaccacaacagaaacttatcattgttgagggatgtcaacgccagggtgccattgttgctgtaactggagatggtgtcaatgattcaccggccttgaagagagctgacattggggttgccatgggtatcgctggctcagatgtgtccaaacaagctgctgacatgattctgttggacgacaactttgcatcaattgtcactggagtagaagaaggtcgtttgatctttgacaatttgaaaaagtctattgcatacacactgaccagtaacattccagagatcagtccattcttgatgtttatcattctggacattcctcttcctcttggcactgttaccattctgtgcattgatctgggtactgacatggttcctgcaatttcattggcttatgaaaaggctgagtcagacatcatgaagcgacaacctcgcgaccctctcaatgacaagcttgtgaatgaaagattgattgctatggcatatggccagattggtatgattcaggccactgctggtttctttacttactttgtcatcatgggagaaaatggctttattccttactttttgtttggtttgagaaaatcatgggatgacagatcaattaatgatttgcaagattactatggacaggaatggacttatactcagcgtaaagtcttggagtatacatgccacacagcattctttgtgagcattgtgatcgtgcagtgggctgatcttatcatctgcaaaaccaggcgcaattcagtttttacacaaggaatgaagtacgtaccaaaacctccattgtaa

Transcript

g3592.t1

ATGAGCAAGGCAAAGGGAGCGAAGGGGTCATCAGAGGAGAAAGAGAATCTGTTTGGAAGGAGCCAAAGTTATCGTGTGGCTACAACTCCACTCGTCGATGATGGCTCCAAAGCCAAAAAAGCGGACAAGAAAtcgaagaagaaagagaaaaaagaaaacttagaAGAGCTAAAAAAGGAGTTAGAAATTgATTGGCATACGATCTCCTTGGAAGAAGTCTTAACTCGTTTGGAGACGAATGTTGAAACGGGTCTATCGAAGGAAAAAGCTGAAGAAATTCTGAAACGTGATGGTCCCAATGCATTGACCCCCCCACCTACCACCCCTGAGTGGGTCAAGTTTTGTAAACAATTGTTTGGAGGGTTTGCTATGCTGCTATGGGTAGGATCAGTTCTCTGTTTTGTGGCCCATGGTATTCTTTTAGCTACAGAGGAAGATCCAGCTAGTGATAATTTATATCTTGGAGTTGTGTTAGCTCTTGTGGTTATCGTCACTGGTATTTTCTCGTACTACCAGGAAGCCAAGAGCTCCAGAATCATGGAAAGTTTCAAGAATTTGGTTCCTCAGGAAGCACATGTGCTACGTGGTGGTGAACGGTATACAATCAATGCAGAAGAAGTGGTTGTGGGTGATATTATTTTTGTCAAAGGTGGTGATAGGATTCCGGCTGATATCAGAGTAGTGGAAGCTAGAGGATTTAAGgtTGACAATTCATCGCTGACTGGTGAATCTGAACCCCAAAGCCGTGGTCCTGACTGTACCAATGAAAATCCTTTGGAAACCAGGAACATTGCTTTCTTCTCTACGAATGGGCTGGAAGGCAATTGTATTGGCATCGCTGTCCAAACAGGGGATAACACTGTGATGGGACGTATTGCTAATTTGGCTAGTGGTCTAGGAAGTGACAAAACTCCAATTGCTATTGAGATTGAGCATTTCATACACATCATTACTGGTGTTGCTGTTTTTCTTGGAGTATCGTTTTTTATCATTGCATTCATCCTGCAGTACATCTGGATTGAGGCTGTCATCTTTTTGATTGGTATTATTGTGGCTAATGTTCCTGAAGGTCTTCTGGCGACTGTCACAGTGTGTTTGACTCTCACTGCAAAAAGGATGGCATCCAAAAACTGCTTGGTGAAGAATCTTGAGGCTGTAGAAACGCTTGGTAGCACATCAACCATCTGTTCAGATAAGACAGGAACACTGACGCAAAACAGAATGACAGTTGCTCACATGTGGTTTGATAGCACAATTATTGAAGCTGATACAACAGAGGATCAATCCGGAGTATCATTCGATAAGACATCCAACACATGGAAAGCTCTGGCCCGCATCGCAGGACTGTGTAACAGAGCAGTCTTTAAGGCAGATCAGGACCACATTCCTATTCTAAAGAGGGATTGCTCTGGAGATGCGTCAGAATCTGCTTTAATGAAGTATGTTGAGCTGTCAGAGGGCAGCGTCAAAGACATGAGAGAGAGTTACAAGAAGGTTGCAGAAATTCCTTTCAACTCCACTAATAAGTATCAAGTGTCAATTCATGAAAATGCAGATCCAGAGGACAAGCGATACCTTTTGGTTATGAAGGGTGCACCTGAGAGAATTTTGGACAGATGTTCAACAATCATGATAAATGGAGAAGTACTTGAGCTGGATGAGAAGATGCAAGAGGCTTTCAACACAGCGTACCTTGAGCTTGGAGGCATGGGGGAGCGTGTTCTTGGTTTTTGTCAATGTCTACTGCCCTTGGAAGAGTTTCCAGAAGGTTTTGAATTTGTTACTGATGAGCCTCCCAATTTCCCTCTCgaaaacttgtgttttgtcgGTTTGATGTCCATGATTGATCCTCCTCGTGCAGCTGTACCTGATGCAGTTAGCAAGTGCCGTAGTGCGGGAATTAAAGTCATTATGGTGACTGGTGATCATCCTATCACAGCTAAAGCTATTGCTAAAGGCGTTGGAATCATTTCTGAAGgAACTGAGACCAAGGAGGATGTTGCAGCTCGCCTGAATATCCCTgtagaagaagttgaccctAGAATGGCTAAAGCCATTGTTGTTCATGGCTCACAGTTGAAGGACATGAAGAGAGACGACATTGATGAGATTCTGTCATACCATACAGAGATTGTTTTCGCCCGAACATCACCACAACAGAAACTTATCATTGTTGAGGGATGTCAACGCCAGGGTGCCATTGTTGCTGTAACTGGAGATGGTGTCAATGATTCACCGGCCTTGAAGAGAGCTGACATTGGGGTTGCCATGGGTATCGCTGGCTCAGATGTGTCCAAACAAGCTGCTGACATGATTCTGTTGGACGACAACTTTGCATCAATTGTCACTGGAGTAGAAGAAGgTCGTTTGATctttgacaatttgaaaaagtcTATTGCATACACACTGACCAGTAACATTCCAGAGATCAGTCCATTCTTGATGTTTATCATTCTGGACATTCCTCTTCCTCTTGGCACTGTTACCATTCTGTGCATTGATCTGGGTACTGACATGGTTCCTGCAATTTCATTGGCTTATGAAAAGGCTGAGTCAGACATCATGAAGCGACAACCTCGCGACCCTCTCAATGACAAGCTTGTGAATGAAAGATTGATTGCTATGGCATATGGCCAGATTGGTATGATTCAGGCCACTGCTGGTTTCTTTACTTACTTTGTCATCATGGGAGAAAATGGCTTTATTCCTTACTTTTTGTTTGGTTTGAGAAAATCATGGGATGACAGATCAATTAATGATTTGCAAGATTACTATGGACAGGAATGGACTTATACTCAGCGTAAAGTCTTGGAGTATACATGCCACACAGCATTCTTTGTGAGCATTGTGATCGTGCAGTGGGCTGATCTTATCATCTGCAAAACCAGGCGCAATTCAGTTTTTACACAAGGAATGAAGTACGTACCAAAACCTCCATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DA1	Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus OX=9913 GN=ATP1A1 PE=1 SV=1
P04074	Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries OX=9940 GN=ATP1A1 PE=1 SV=1
Q9N0Z6	Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus OX=9986 GN=ATP1A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00690 all species →	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005775 all species →	Family	P-type ATPase subfamily IIC, subunit alpha	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR050510 all species →	Family	Cation transport ATPase (P-type)	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR004014 all species →	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43294 all species →	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008556 all species →	Molecular Function	P-type potassium transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005391 all species →	Molecular Function	P-type sodium:potassium-exchanging transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01539	ATP1A; sodium/potassium-transporting ATPase subunit alpha	EC:7.2.2.13	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g3592.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

504.4Max TPM

146.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	169.97	504.42
whole organisms · low pH treatment	15	15	120.28	245.49
whole organisms · extra low pH treatment pH treatment	12	12	138.57	297.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	504.42
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	473.08
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	308.95
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	286.11
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	281.47
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	244.37
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	227.16
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	224.84
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	188.71
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	145.07
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	143.48
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	136.52
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	116.20
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	75.42
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	56.33
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	34.77
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	33.08
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	31.14
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	26.70
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	18.97
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	12.60
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	245.49
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	232.46
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	229.34
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	185.09
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	175.67
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	153.83
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	142.75
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	133.71
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	121.01
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	55.93
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	44.89
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	28.60
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	22.24
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	19.30
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	13.89
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	297.73
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	296.11
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	272.41
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	190.87
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	173.67
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	130.96
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	119.13
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	58.41
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	45.28
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	33.12
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	25.52
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	19.62

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.