Detailed information of g36.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NCT40930.1, phage tail protein [Alphaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q775C3Probable portal protein OS=Bordetella phage BPP-1 OX=2885909 GN=bbp21 PE=3 SV=1
P59015Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio OX=7955 GN=vps18 PE=2 SV=2
Q9P253Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=VPS18 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00431CUBCUB domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF05131Pep3_Vps18Pep3/Vps18/deep orange beta-propeller domainRepeatInterproscan
PF10220Smg8_Smg9Smg8_Smg9 FamilyInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF12236Head-tail_conBacteriophage head to tail connecting proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR050125FamilyG-protein coupled receptor opsinsInterproscan
IPR053207FamilyNon-NMDA Glutamate Receptor Accessory ProteinInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR000859DomainCUB domainInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR007810DomainPep3/Vps18/deep orange, beta-propeller domainInterproscan
IPR000547RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR019354FamilyNonsense-mediated mRNA decay factor SMG8-likeInterproscan
IPR047153FamilyTRIM45/56/19Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR003649DomainB-box, C-terminalInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR046373Homologous_superfamilyAcyl-CoA oxidase/dehydrogenase, middle domain superfamilyInterproscan
IPR009100Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamilyInterproscan
IPR012258FamilyAcyl-CoA oxidaseInterproscan
IPR020991FamilyHead-to-tail connector protein, podovirus-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR24240OPSINInterproscan
PTHR47537CUBILINInterproscan
PTHR23323VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEINInterproscan
PTHR13091AMPLIFIED IN BREAST CANCER 2-RELATEDInterproscan
PTHR25462BONUS, ISOFORM C-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR10909ELECTRON TRANSPORT OXIDOREDUCTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0007602Biological ProcessphototransductionInterproscan
GO:0008020Molecular FunctionG protein-coupled photoreceptor activityInterproscan
GO:0071482Biological Processcellular response to light stimulusInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0006904Biological Processvesicle docking involved in exocytosisInterproscan
GO:0007032Biological Processendosome organizationInterproscan
GO:0007033Biological Processvacuole organizationInterproscan
GO:0007040Biological Processlysosome organizationInterproscan
GO:0008333Biological Processendosome to lysosome transportInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0048284Biological Processorganelle fusionInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0003997Molecular Functionacyl-CoA oxidase activityInterproscan
GO:0005504Molecular Functionfatty acid bindingInterproscan
GO:0005777Cellular ComponentperoxisomeInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0016402Molecular Functionpristanoyl-CoA oxidase activityInterproscan
GO:0033540Biological Processfatty acid beta-oxidation using acyl-CoA oxidaseInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0055088Biological Processlipid homeostasisInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18734SMG8; protein SMG8-Membrane traffickingko04131deepkoala
Ion channelsko04040deepkoala
Messenger RNA biogenesisko03019deepkoala

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