Gene detail

Detailed information of g360.t1 in Acropora digitifera

Genomic Location: chr1Alt:5017635...5032139
NR annotation: CAH3172263.1, unnamed protein product [Porites lobata]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g360.t1

ATGTGCCGTAAGATTTCTTTCCTGCTCGCCATCTTGGCATTATTTTGTGGCCATCAGACGGTGGCAGCTGTGACCATAGACCCACGTTCATTGCAAACACCATCTGGCAGAGAAATAACCATTAGATGTACAATGAGCGAAGGAGAAACGTTTCTTGGTTGGTTTAAGCCAGATAAGACTCAGGTTCCCCGTTCTTCGTCTGCAACGGTACATGTGGAGGTGAACACAAACACATTCAGACTAAAATTTACAGATGTGAAGGTGGAGGAAGGTGGTGAATATGAGTGCCGCAGCCGCACTGGCACTAAAGGAACATTTACCTTGGATATTCTCTTTGACACATCAAAGGTGCAGCACACACAACATATTAAAATAGGAACAGAAGGCACTATTACTTTAGGAGTCACAGGTTACCCAAAACCAACAATGACGTGGAAGAAGGAAAAAACTACCTTAAATGCTGCCGGAGATCCCCGCTACACTCTACTCAATGATGGCTCCCTGAAAATAAAAAATGTCAAAATTGCTGACCAAGGCAATTACACTGTACACGTTCAACAAGGAGCGGGTAGTGAGGAGGTTAAAATTGAGGTGTATGCTGTGGAACATCCAAAGATTGTAGCTTTCCCAGACTCCAAGAAGTACCTCACTGAAGGTTACTCTGCAGTGTTCATCTGCAAAGCAACTGCCAGGCCACCACCAAAATATGAATGGCTCAACCCAAAAGGCACCAAGATAACATCATTTGGGCCCTTCGAAATCAGCGGTGGTAACTTAACTATCAAGAGAGTCACCACAGATATGAATGGAACCTACACATGCAGAGCATATAATGTCATTGAAAAAACAGGAGTGCAGATTGGAGAAGTCAAAGCCAAGGTTGCAATTGTTGCTATTCACGTCCCTCCTACAATCGAAATTATTAGTAATGATCCCACGACTCTAGAGAAAGGTAAAAAGGCTACATTCACATGCAGAGCCAAAGGATCTCCCATACCAACTGTTAAGTGGACAAGGAATGGACAAAGAGACCCTCGTCAAAAGATTTCAAAGCTGGGTGAAAGTACTATTGCACTAAAAAGGGTTCAACTTGTGGATGGAGGAAAGTACATTTGTGAGGCAAGGAACAGTGCTGTGGATGGTAATGGCAAAGCTATTGTTGTCAGGAAGGTCCACACTCTTCAAGTCATGTCCCGTCCATTTATCAACGTGCAGGCCTCTCCAAGCACAATTTACTCTTACATTGGAAACACTGACCCCACTTATATCAGCTGTACATTTGGTGGTGCCCCTGTGCCTTGGGTTGTTATGACGTTCAACAAGAAGCTCCAATCAAATGCATCAAGTACAGCAAATGTGAGCATTATCACAGATTCCAAAAAGAAATTTGGGACTTTTCATTGTCGGGCCAAGAATGTGTATGGGATCAAAAACCAGACCATCCAACTTAAAGAAGTGGAACCTCCAGGACTAGTTCGTGAATTTGCACATGAAGCTAAATGTGATAGTGTAACACTTACTTGGAAGAAACCTTCAAGAGACGGAGGAATGCCAATCACAAAGTTTGTCCTGTATTATCCAGGTGTTATGCGAAATATTGATGCCTCAGAGACTTCGTACACTGTCACAGAGCTTGATCGAAATAAAAAGTACAGTTTTGACATCCGAGCCACCAATAAGGGAGCCTGGGGTCCAAGAACAACTACAACAGTAACAACAAAAAAGTATTGTGAACCTGGACGCCCCATTATTTACGAGCCACAAGGCATCGATCTCGAGGAAACAAGTTTTACTCTCAAGTGGCGCCGACCACAGGACGATGGAGGAGATAAAAACATCGAGTACATTGTCAGATACCGCGAACAGACGGAGAGTAAACCGGGGCCTTGGAAGGAATTTGTAACAAAGAAACAGGAACACAGAATCAAAAATCTAGGCAAAGACAAGAATTACAAGGTTGAGGTGATGGCGAGAAATAAAGGTGGAAATAGCAGCCCTGATCAGAGATTTTACTCTACAACGAAAATTACAGTCCTCGCCAGTTCGCAGTCTCGATTGGTCGCTAGTGTGCTAGTAACATTTATGGTAGGAGTCCTTCATCTTCTCTGA

Transcript

chr1Alt.g360.t1

GCAAGATCGCGTCTAGTAACAACGGTCAGTCGTATTCCTGTGAGATCGGAAGCTTTAGTTTTATTTTTCACTGGTTGACGAAAAACACTCAAGGCTATGAGAGAAGAACTCCAAATGTGCCGTAAGATTTCTTTCCTGCTCGCCATCTTGGCATTATTTTGTGGCCATCAGACGGTGGCAGCTGTGACCATAGACCCACGTTCATTGCAAACACCATCTGGCAGAGAAATAACCATTAGATGTACAATGAGCGAAGGAGAAACGTTTCTTGGTTGGTTTAAGCCAGATAAGACTCAGGTTCCCCGTTCTTCGTCTGCAACGGTACATGTGGAGGTGAACACAAACACATTCAGACTAAAATTTACAGATGTGAAGGTGGAGGAAGGTGGTGAATATGAGTGCCGCAGCCGCACTGGCACTAAAGGAACATTTACCTTGGATATTCTCTTTGACACATCAAAGGTGCAGCACACACAACATATTAAAATAGGAACAGAAGGCACTATTACTTTAGGAGTCACAGGTTACCCAAAACCAACAATGACGTGGAAGAAGGAAAAAACTACCTTAAATGCTGCCGGAGATCCCCGCTACACTCTACTCAATGATGGCTCCCTGAAAATAAAAAATGTCAAAATTGCTGACCAAGGCAATTACACTGTACACGTTCAACAAGGAGCGGGTAGTGAGGAGGTTAAAATTGAGGTGTATGCTGTGGAACATCCAAAGATTGTAGCTTTCCCAGACTCCAAGAAGTACCTCACTGAAGGTTACTCTGCAGTGTTCATCTGCAAAGCAACTGCCAGGCCACCACCAAAATATGAATGGCTCAACCCAAAAGGCACCAAGATAACATCATTTGGGCCCTTCGAAATCAGCGGTGGTAACTTAACTATCAAGAGAGTCACCACAGATATGAATGGAACCTACACATGCAGAGCATATAATGTCATTGAAAAAACAGGAGTGCAGATTGGAGAAGTCAAAGCCAAGGTTGCAATTGTTGCTATTCACGTCCCTCCTACAATCGAAATTATTAGTAATGATCCCACGACTCTAGAGAAAGGTAAAAAGGCTACATTCACATGCAGAGCCAAAGGATCTCCCATACCAACTGTTAAGTGGACAAGGAATGGACAAAGAGACCCTCGTCAAAAGATTTCAAAGCTGGGTGAAAGTACTATTGCACTAAAAAGGGTTCAACTTGTGGATGGAGGAAAGTACATTTGTGAGGCAAGGAACAGTGCTGTGGATGGTAATGGCAAAGCTATTGTTGTCAGGAAGGTCCACACTCTTCAAGTCATGTCCCGTCCATTTATCAACGTGCAGGCCTCTCCAAGCACAATTTACTCTTACATTGGAAACACTGACCCCACTTATATCAGCTGTACATTTGGTGGTGCCCCTGTGCCTTGGGTTGTTATGACGTTCAACAAGAAGCTCCAATCAAATGCATCAAGTACAGCAAATGTGAGCATTATCACAGATTCCAAAAAGAAATTTGGGACTTTTCATTGTCGGGCCAAGAATGTGTATGGGATCAAAAACCAGACCATCCAACTTAAAGAAGTGGAACCTCCAGGACTAGTTCGTGAATTTGCACATGAAGCTAAATGTGATAGTGTAACACTTACTTGGAAGAAACCTTCAAGAGACGGAGGAATGCCAATCACAAAGTTTGTCCTGTATTATCCAGGTGTTATGCGAAATATTGATGCCTCAGAGACTTCGTACACTGTCACAGAGCTTGATCGAAATAAAAAGTACAGTTTTGACATCCGAGCCACCAATAAGGGAGCCTGGGGTCCAAGAACAACTACAACAGTAACAACAAAAAAGTATTGTGAACCTGGACGCCCCATTATTTACGAGCCACAAGGCATCGATCTCGAGGAAACAAGTTTTACTCTCAAGTGGCGCCGACCACAGGACGATGGAGGAGATAAAAACATCGAGTACATTGTCAGATACCGCGAACAGACGGAGAGTAAACCGGGGCCTTGGAAGGAATTTGTAACAAAGAAACAGGAACACAGAATCAAAAATCTAGGCAAAGACAAGAATTACAAGGTTGAGGTGATGGCGAGAAATAAAGGTGGAAATAGCAGCCCTGATCAGAGATTTTACTCTACAACGAAAATTACAGTCCTCGCCAGTTCGCAGTCTCGATTGGTCGCTAGTGTGCTAGTAACATTTATGGTAGGAGTCCTTCATCTTCTCTGACCGACAACACTATTAAAAAACCCAACAGCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
O35136	Neural cell adhesion molecule 2 OS=Mus musculus OX=10090 GN=Ncam2 PE=1 SV=1
O60469	Cell adhesion molecule DSCAM OS=Homo sapiens OX=9606 GN=DSCAM PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR051170 all species →	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231 all species →	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g360.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

430.6Max TPM

234.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	234.11	430.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	430.65
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	422.56
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	356.19
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	350.99
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	313.51
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	304.59
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	266.24
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	264.44
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	261.19
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	253.33
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	247.92
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	240.81
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	239.68
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	238.10
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	236.98
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	236.57
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	228.40
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	215.65
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	211.06
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	206.04
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	205.99
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	204.54
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	203.47
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	201.50
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	199.99
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	199.44
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	197.35
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	195.12
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	193.37
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	193.12
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	191.93
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	191.21
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	188.10
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	184.57
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	183.64
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	179.52
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	173.88
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	160.70
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	157.84

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.