Detailed information of g364.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027035800.1, WASH complex subunit 1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5U4A3WASH complex subunit 1 OS=Xenopus laevis OX=8355 GN=washc1 PE=2 SV=1
Q5ZKA6WASH complex subunit 1 OS=Gallus gallus OX=9031 GN=WASHC1 PE=2 SV=1
Q28DN4WASH complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=washc1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11945WASH_WAHDWAHD domain of WASH complexDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00464SHMTSerine hydroxymethyltransferaseDomainInterproscan
PF15123DUF4562Domain of unknown function (DUF4562)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02724CDC45CDC45-like proteinFamilyInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF02845CUECUE domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028290FamilyWASH1Interproscan
IPR021854DomainWASH1, WAHD domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001085FamilySerine hydroxymethyltransferaseInterproscan
IPR049943FamilySerine hydroxymethyltransferase-likeInterproscan
IPR039429DomainSerine hydroxymethyltransferase-like domainInterproscan
IPR019798Binding_siteSerine hydroxymethyltransferase, pyridoxal phosphate binding siteInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR027814FamilyProtein of unknown function DUF4562Interproscan
IPR052343FamilyDiverse Retrotransposon and Effector-Associated ProteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR003874FamilyCDC45 familyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052055FamilyHepadnavirus polymerase/reverse transcriptaseInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR050590FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR003892DomainUbiquitin system component CUEInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23331CXYORF1Interproscan
PTHR11680SERINE HYDROXYMETHYLTRANSFERASEInterproscan
PTHR34833GENE, 17359-RELATEDInterproscan
PTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDInterproscan
PTHR10507CDC45-RELATED PROTEINInterproscan
PTHR33050REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005769Cellular Componentearly endosomeInterproscan
GO:0006887Biological ProcessexocytosisInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0034314Biological ProcessArp2/3 complex-mediated actin nucleationInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0043014Molecular Functionalpha-tubulin bindingInterproscan
GO:0043015Molecular Functiongamma-tubulin bindingInterproscan
GO:0055037Cellular Componentrecycling endosomeInterproscan
GO:0071203Cellular ComponentWASH complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004372Molecular Functionglycine hydroxymethyltransferase activityInterproscan
GO:0019264Biological Processglycine biosynthetic process from serineInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0035999Biological Processtetrahydrofolate interconversionInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006565Biological ProcessL-serine catabolic processInterproscan
GO:0006730Biological Processone-carbon metabolic processInterproscan
GO:0046653Biological Processtetrahydrofolate metabolic processInterproscan
GO:0046655Biological Processfolic acid metabolic processInterproscan
GO:0050897Molecular Functioncobalt ion bindingInterproscan
GO:0070905Molecular Functionserine bindingInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0000727Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0003688Molecular FunctionDNA replication origin bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0031261Cellular ComponentDNA replication preinitiation complexInterproscan
GO:1902977Biological Processmitotic DNA replication preinitiation complex assemblyInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0017091Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12589RRP42, EXOSC7; exosome complex component RRP42-Membrane traffickingko04131deepkoala
Antifolate resistanceko01523deepkoala
Messenger RNA biogenesisko03019deepkoala

TOP