Detailed information of g365.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_048585706.1, methionine synthase [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9Z2Q4Methionine synthase OS=Rattus norvegicus OX=10116 GN=Mtr PE=1 SV=1
A6H5Y3Methionine synthase OS=Mus musculus OX=10090 GN=Mtr PE=1 SV=1
Q4JIJ3Methionine synthase OS=Bos taurus OX=9913 GN=MTR PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|GAT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02628COX15-CtaACytochrome oxidase assembly proteinFamilyInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF15410PH_9Pleckstrin homology domainDomainInterproscan
PF01019G_glu_transpeptGamma-glutamyltranspeptidaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03127GATGAT domainDomainInterproscan
PF01612DNA_pol_A_exo13'-5' exonucleaseDomainInterproscan
PF00570HRDCHRDC domainDomainInterproscan
PF01428zf-AN1AN1-like Zinc fingerFamilyInterproscan
PF02574S-methyl_transHomocysteine S-methyltransferaseFamilyInterproscan
PF02607B12-binding_2B12 binding domainDomainInterproscan
PF02310B12-bindingB12 binding domainDomainInterproscan
PF02965Met_synt_B12Vitamin B12 dependent methionine synthase, activation domainDomainInterproscan
PF00809Pterin_bindPterin binding enzymeDomainInterproscan
PF00005ABC_tranABC transporterDomainInterproscan
PF00664ABC_membraneABC transporter transmembrane regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR003780FamilyCOX15/CtaA familyInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001605DomainPleckstrin homology domain, spectrin-typeInterproscan
IPR041681DomainPleckstrin homology domain 9Interproscan
IPR043138Homologous_superfamilyGamma-glutamyltranspeptidase, large subunit, C-terminal domainInterproscan
IPR043137Homologous_superfamilyGamma-glutamyltranspeptidase, small subunitInterproscan
IPR000101FamilyGamma-glutamyltranspeptidaseInterproscan
IPR029055Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR038425Homologous_superfamilyGAT domain superfamilyInterproscan
IPR004152DomainGAT domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR010997Homologous_superfamilyHRDC-like superfamilyInterproscan
IPR002562Domain3'-5' exonuclease domainInterproscan
IPR044876Homologous_superfamilyHRDC domain superfamilyInterproscan
IPR051086FamilyRibonuclease D-likeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR002121DomainHRDC domainInterproscan
IPR000058DomainZinc finger, AN1-typeInterproscan
IPR035896Homologous_superfamilyAN1-like Zinc fingerInterproscan
IPR053061FamilyAN1-type zinc finger domain-containing proteinInterproscan
IPR004223DomainVitamin B12-dependent methionine synthase, activation domainInterproscan
IPR006158DomainCobalamin (vitamin B12)-binding domainInterproscan
IPR037010Homologous_superfamilyVitamin B12-dependent methionine synthase, activation domain superfamilyInterproscan
IPR036594Homologous_superfamilyMethionine synthase domainInterproscan
IPR003759DomainCobalamin (vitamin B12)-binding module, cap domainInterproscan
IPR050554FamilyMethionine Synthase/CorrinoidInterproscan
IPR036589Homologous_superfamilyHomocysteine-binding domain superfamilyInterproscan
IPR003726DomainHomocysteine-binding domainInterproscan
IPR011005Homologous_superfamilyDihydropteroate synthase-like superfamilyInterproscan
IPR011822FamilyCobalamin-dependent methionine synthaseInterproscan
IPR000489DomainPterin-binding domainInterproscan
IPR036724Homologous_superfamilyCobalamin-binding domain superfamilyInterproscan
IPR033706DomainMethionine synthase, B12-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan
IPR036640Homologous_superfamilyABC transporter type 1, transmembrane domain superfamilyInterproscan
IPR044746DomainABC transporter C family, six-transmembrane helical domain 1Interproscan
IPR017871Conserved_siteABC transporter-like, conserved siteInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR050173FamilyATP-binding cassette transporter CInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan
PTHR11686GAMMA GLUTAMYL TRANSPEPTIDASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13856VHS DOMAIN CONTAINING PROTEIN FAMILYInterproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47649RIBONUCLEASE DInterproscan
PTHR46728AN1-TYPE ZINC FINGER PROTEIN 4Interproscan
PTHR45833METHIONINE SYNTHASEInterproscan
PTHR24223ATP-BINDING CASSETTE SUB-FAMILY CInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006784Biological Processheme A biosynthetic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016653Molecular Functionoxidoreductase activity, acting on NAD(P)H, heme protein as acceptorInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005543Molecular Functionphospholipid bindingInterproscan
GO:0006751Biological Processglutathione catabolic processInterproscan
GO:0036374Molecular Functionglutathione hydrolase activityInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0030276Molecular Functionclathrin bindingInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0044237Biological Processobsolete cellular metabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008705Molecular Functionmethionine synthase activityInterproscan
GO:0009086Biological Processmethionine biosynthetic processInterproscan
GO:0031419Molecular Functioncobalamin bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0046653Biological Processtetrahydrofolate metabolic processInterproscan
GO:0050667Biological Processhomocysteine metabolic processInterproscan
GO:0042558Biological Processpteridine-containing compound metabolic processInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0042626Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18740EXD1, EGL; exonuclease 3'-5' domain-containing protein 1-Cobalamin transport and metabolismko04980deepkoala
Transportersko02000deepkoala
CD moleculesko04090deepkoala
Messenger RNA biogenesisko03019deepkoala

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