Gene detail

Detailed information of g366.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBT8411541.1, acyl-CoA/acyl-ACP dehydrogenase [Octadecabacter sp.]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2LQN9	Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=SYNAS_02220 PE=1 SV=1
Q9UKU7	Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACAD8 PE=1 SV=1
A8XNF0	Probable medium-chain specific acyl-CoA dehydrogenase 1, mitochondrial OS=Caenorhabditis briggsae OX=6238 GN=acdh-10 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0000055 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000738 (this species only)
Orthogroup (gene family)	OG0000845 (this species only)
Orthogroup (gene family)	OG0000998 (this species only)
Orthogroup (gene family)	OG0002751 (this species only)
Orthogroup (gene family)	OG0006103 (this species only)
Orthogroup (gene family)	OG0006666 (this species only)
Orthogroup (gene family)	OG0015669 (this species only)
Orthogroup (gene family)	OG0059543 (this species only)
Orthogroup (gene family)	OG0170841 (this species only)
Orthogroup (gene family)	OG0172937 (this species only)
Orthogroup (gene family)	OG0174591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan
PF02938 all species →	GAD	GAD domain	Domain	Interproscan
PF00152 all species →	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF14465 all species →	NFRKB_winged	NFRKB Winged Helix-like	Domain	Interproscan
PF00687 all species →	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR047089 all species →	Domain	Aspartate-tRNA ligase, type 1, anticodon recognition domain	Interproscan
IPR029351 all species →	Domain	GAD domain	Interproscan
IPR004524 all species →	Family	Aspartate-tRNA ligase, type 1	Interproscan
IPR002312 all species →	Family	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR004364 all species →	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004115 all species →	Homologous_superfamily	GAD-like domain superfamily	Interproscan
IPR047090 all species →	Domain	Aspartate-tRNA ligase, type 1, core domain	Interproscan
IPR025220 all species →	Domain	NFRKB winged helix-like domain	Interproscan
IPR024867 all species →	Family	Nuclear factor related to kappa-B-binding protein	Interproscan
IPR038106 all species →	Homologous_superfamily	NFRKB winged helix-like domain superfamily	Interproscan
IPR016095 all species →	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR023673 all species →	Conserved_site	Large ribosomal subunit protein uL1, conserved site	Interproscan
IPR023674 all species →	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR050257 all species →	Family	Eukaryotic ribosomal RNA-processing and assembly protein	Interproscan
IPR028364 all species →	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR034113 all species →	Domain	Golgi-associated plant pathogenesis-related protein 1, SCP domain	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR001283 all species →	Family	Cysteine-rich secretory protein-related	Interproscan
IPR018244 all species →	Conserved_site	Allergen V5/Tpx-1-related, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884 all species →	ACYL-COA DEHYDROGENASE	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR22594 all species →	ASPARTYL/LYSYL-TRNA SYNTHETASE	Interproscan
PTHR13052 all species →	NFRKB-RELATED	Interproscan
PTHR23105 all species →	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12461 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR23504 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	Interproscan
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan
PTHR10334 all species →	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004815 all species →	Molecular Function	aspartate-tRNA ligase activity	Interproscan
GO:0006422 all species →	Biological Process	aspartyl-tRNA aminoacylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0002020 all species →	Molecular Function	protease binding	Interproscan
GO:0031011 all species →	Cellular Component	Ino80 complex	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01876	DARS2, aspS; aspartyl-tRNA synthetase	EC:6.1.1.12	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.