Gene detail

Detailed information of g3668.t1 in Tripedalia maipoensis

Genomic Location: scaffold_14:15700767...15765677
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3668.t1

ATGGATTCTGGATCGGAAACCACACTTCAAGTTTCAAGTGGAAGTTCATCCCAAGAAGACGAGGAGAGCGGGAGATCTTCACGAGGGCACTCTTTTTCGTCTGTTGAGGAATTAGACAGCGCTGGATCAGGGAAAAATATATCATATAGTCCCTTTTCTTTGAGTATTAATAGGAAGGTAAGCATGTCTAAAGTTGAAGGAGTTAGTAATGTTGGTTCATCGATACCATCATCTGCAGCGGCTCAACTAAAGGATATCGCATCGCCTAGTTTAACAGCTTCTCTGTTAAAGGACCCAAATATGTCGCCCAAAAAACAAGTTCAAGAACTTCAGCGAGAGCTGACCAATTTAAAGAAAGAGATGGACAGTAAGGATGCTAAACTGAGCTCTAGTATGCGCAGTATTAAGATGTTTTGGAGTCCTGAACTGAAGAAGGAGAGAGCATTGCGCAAGGAGGAGGCTGAGAAATTTGTGGCAGCGAGAGAACAAGTCAAGAAAATGAAAGAGGAATGCCAGAAGCGGTCCAAGAAAGTAAAGGATCTGGAAGCTCAGCTAGAAACAGAGCAGCGGTTGAACAGGGATCACTTGCTCTCTGAGCAGCAAATTGCGGAACAACGGAAAACCGAAGCAGCGGAACTAGAACGGGTCAAGGAAGAGAAAGGGAAATATCAAGATGAAAATGTATTGCTGCAAAAGCTGGTCAGTGAATTAGAGGAGAATGTGAAAAATCTGGCAGAAGGGCTTGAGCGGAGTAAATGTACCTTAGATTCAGTGGTGTTGGAAAAGGCAGAGGCTGTACGCGACAAGGAGAGCGTGGCAAAGGCATTGGAGAGTGCGAAAGAGGAGATTGGGAATCTGAGGACCACATTGCAGCGTAAAGAGGAAGAAGACTCCACGCTAAGAAAGAGCATTGAGCAACTGAAAGCGCAGGAAATGAAGTTAAGGAACTCTCTGGACACGAAGACGACAGAAATTTCTGACCTGAAGAAACAGATAACGCTGTTTAAAGATGAGGCCACCGAACTAAAGCGGGAAAAAGACCGAAGGCTGAAACAGCAGATGGTGGAAGAAGACTCTCAAGAGATGCTGAGGAATGAAGTGATGGCTCTTCAGATGCGGCTGGACTCGTTCGAGACAAATGCAGCTGTGAAGGACGCAGAAATCGTGTCCTTGCAGTCCGTGATAGACAGCTTGCAGTCGAAGAGTGGGGCTCAGGTGGACAAGGTCAAACAGCTCGAGACTGCCCTTTCCGCTCAAAATGTGGAAGTGAAAAACTTGGAAGACGAGGTCTGCAGTTTGACGTCGGCCCTCGGCGAGAAGGAAAATCTAGTCAGACAAAAAGAGGATCACCTTGCTTCGCTAACGCTATCCAGTAATCGCCGAGACACGGAGCTGGAGCAGTTAAGAGAAGCGATAGAAAAGAAAACAGACGAAACAAAACGATTGGATGCTAAATACGAAAAGTTAGACAACTATGTCTGCGAACGAGAGAAAGCTCTTGCACAGTCTCGTGAAGAGGTGAATCATCTTAGGTCAGCGCATGCGAATTGCAGTACCACTATTTCGGTCTTGGAAGGGCAGCTTCGAGAGAAGGAAGATTTTCTGGCACAGCTCACCTTGGATTATGAAAAAATGGAGCGTGAAATCGGAGAGCTGGGCAATTTACCGAAGAGGGACTCGCAGCAAGCGAAGGAGAGCGAGTCTGCGCCTAGTCATAGTGGAGGCGAGGACATCATAAGGCAGCTAGAGACTAAAGCCAACGAATTGACGATGAAACTGGAGGAACAGGAGTCGAATATAGAAAATCTAAATCGTGTCCTCGAAACGAAGGATCGAACGATCGAAGACCTGACGAAAGAAATTCGAAAGGCACAAGATGCAATCAGTAAACTTGAGGACGAAGTGAACAGTAAGAACAATAAGATAAAAGATCTCCAAGGCGAAAACACTGTGACAAAGGATGATAATAAAGAAAATGTCCGCCCCTCCTCTCAAGGCCCCCAAAGTCGGACATCAAAGCAATTGCTGGAGGACATCGCAAATAAGGATGCCAGAATCACAGATCTTGAGAAGCAACTCAAAGATAAGAGTAAACTACTCAGTGTCCGTCGCCGAAGCGAGACTACGGAGCGCGGCAAAGAGGCCCAGCAGTTCTCAGAGCAGCTGAAACAGAACGATGAAGTGAAAGCAAAACTGACCGAGTTGCAGGATGAACTGGAAAAGAAAGACGACCGCATCATGGTCTTGGAGGATGCGCTTCGAGAGAGCGTTAGCATCGCCGCCGAGCGTGAGGATTTACTGGCGCAACACGTTGAAATGTCCGAAAAAGCAGCCCGGAAAATCCAAGAGCTAGAGAGCGAAGTCGACCGAGCGACGATGGAAAAGGCGATCACGAATATCAAGAATGCCTTTCTCATTTTGTCAGTGAGTGAGAAGGACTCGGTTCTCGCCATGTTCAAGGCCAACCGACGGAAGAACTTGGAGGAGCTGCTAAACATGAAGCAGAGAGCGTTGGAAGCTTGTATATCAGAGAAAGATATAAATATTGCCTATTTGGAGCAAATCACTTCGTCAAAGACAAAGAAGCAGGAAGCCAAAATACTAATGCAGGAAAAAGCAAGACTTCTCGGTGAACTGAAAGAGCAGACGCAAATACGTATGACGCTTCTCAATAATGAAGAAAATAAGGAAGGGTCACTTGCTAAAGAACTCAGCGATGGAACACGTGACCAGATACTAGAGGCCTTGCGACAAGTAACGGACAGCAGTGATAAACTCGAGTTTTACATAGAGGATCTTTTAACGTTTATCAAAGAGAAGAATCTGGAACTCTTAAAAGAAATGCCTACCTTACCACAGCGAAATGGCAAAGCAATCGATCGACTAAAAAACTGTGGAAAAAATGAGCTATTGAAAGAACTCGAAAGATTGGGACATGAAAGTTCGCAGTTAAAAGGCTACGTCGATTCGATTTTGGACAAATTGGAAGGATAA

Transcript

g3668.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10174 all species →	Cast	RIM-binding protein of the cytomatrix active zone	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037245 all species →	Homologous_superfamily	FIP-RBD, C-terminal domain superfamily	Interproscan
IPR019323 all species →	Family	Active zone protein ELKS	Interproscan
IPR019018 all species →	Domain	Rab-binding domain FIP-RBD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18861 all species →	ELKS/RAB6-INTERACTING/CAST PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0048167 all species →	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788 all species →	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048790 all species →	Biological Process	maintenance of presynaptic active zone structure	Interproscan
GO:0098882 all species →	Molecular Function	structural constituent of presynaptic active zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16072	ERC1, CAST2, ELKS; ELKS/RAB6-interacting/CAST family member 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.