Gene detail

Detailed information of g367.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBW7861901.1, AMP-binding protein [Rhodocyclaceae bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VZF1	Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=AAE7 PE=1 SV=1
M4IS88	Acetate--CoA ligase CCL3 OS=Humulus lupulus OX=3486 GN=CCL3 PE=1 SV=1
F4HUK6	Butanoate--CoA ligase AAE1 OS=Arabidopsis thaliana OX=3702 GN=AAE1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000040 (this species only)
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0000310 (this species only)
Orthogroup (gene family)	OG0000339 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000444 (this species only)
Orthogroup (gene family)	OG0000714 (this species only)
Orthogroup (gene family)	OG0000998 (this species only)
Orthogroup (gene family)	OG0002947 (this species only)
Orthogroup (gene family)	OG0003318 (this species only)
Orthogroup (gene family)	OG0003486 (this species only)
Orthogroup (gene family)	OG0005772 (this species only)
Orthogroup (gene family)	OG0025846 (this species only)
Orthogroup (gene family)	OG0041212 (this species only)
Orthogroup (gene family)	OG0171917 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF00709 all species →	Adenylsucc_synt	Adenylosuccinate synthetase	Domain	Interproscan
PF00121 all species →	TIM	Triosephosphate isomerase	Domain	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF16878 all species →	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00452 all species →	Bcl-2	Apoptosis regulator proteins, Bcl-2 family	Family	Interproscan
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR001114 all species →	Family	Adenylosuccinate synthetase	Interproscan
IPR000652 all species →	Family	Triosephosphate isomerase	Interproscan
IPR035990 all species →	Homologous_superfamily	Triosephosphate isomerase superfamily	Interproscan
IPR042109 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 1	Interproscan
IPR033128 all species →	Active_site	Adenylosuccinate synthase, active site	Interproscan
IPR018220 all species →	Binding_site	Adenylosuccinate synthase, GTP-binding site	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020861 all species →	Active_site	Triosephosphate isomerase, active site	Interproscan
IPR042111 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 3	Interproscan
IPR042110 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 2	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR018244 all species →	Conserved_site	Allergen V5/Tpx-1-related, conserved site	Interproscan
IPR034113 all species →	Domain	Golgi-associated plant pathogenesis-related protein 1, SCP domain	Interproscan
IPR001283 all species →	Family	Cysteine-rich secretory protein-related	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR014010 all species →	Domain	REJ domain	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR031701 all species →	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR020849 all species →	Family	Small GTPase, Ras-type	Interproscan
IPR046939 all species →	Homologous_superfamily	Tripeptidyl-peptidase 2, C-terminal domain superfamily	Interproscan
IPR026298 all species →	Family	Bcl-2 family	Interproscan
IPR036834 all species →	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR046371 all species →	Domain	Bcl-2, Bcl-2 homology region 1-3	Interproscan
IPR002475 all species →	Family	Bcl2-like	Interproscan
IPR020726 all species →	Conserved_site	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Interproscan
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR43859 all species →	ACYL-ACTIVATING ENZYME	Interproscan
PTHR11846 all species →	ADENYLOSUCCINATE SYNTHETASE	Interproscan
PTHR10334 all species →	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	Interproscan
PTHR12461 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan
PTHR46730 all species →	POLYCYSTIN-1	Interproscan
PTHR10390 all species →	HOMEOBOX PROTEIN SIX	Interproscan
PTHR24070 all species →	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan
PTHR11256 all species →	BCL-2 RELATED	Interproscan
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004019 all species →	Molecular Function	adenylosuccinate synthase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0004807 all species →	Molecular Function	triose-phosphate isomerase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0044208 all species →	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0046040 all species →	Biological Process	IMP metabolic process	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019003 all species →	Molecular Function	GDP binding	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008630 all species →	Biological Process	intrinsic apoptotic signaling pathway in response to DNA damage	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0097192 all species →	Biological Process	extrinsic apoptotic signaling pathway in absence of ligand	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20034	dmdB; 3-(methylthio)propionyl---CoA ligase	EC:6.2.1.44	Sulfur metabolism	ko00920	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.