Detailed information of g373.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBI1326992.1, AAA family ATPase [Alphaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P17223Anticodon nuclease OS=Escherichia coli OX=562 GN=prrC PE=4 SV=1
A7YWG4Gamma-glutamyl hydrolase OS=Bos taurus OX=9913 GN=GGH PE=2 SV=1
Q92820Gamma-glutamyl hydrolase OS=Homo sapiens OX=9606 GN=GGH PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13166AAA_13AAA domainDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF00023AnkAnkyrin repeatRepeatInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF07724AAA_2AAA domain (Cdc48 subfamily)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF07524Bromo_TPBromodomain associatedDomainInterproscan
PF07722Peptidase_C26Peptidase C26DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF05205COMPASS-Shg1COMPASS (Complex proteins associated with Set1p) component shg1FamilyInterproscan
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF02852Pyr_redox_dimPyridine nucleotide-disulphide oxidoreductase, dimerisation domainDomainInterproscan
PF07992Pyr_redox_2Pyridine nucleotide-disulphide oxidoreductaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR026866DomainProtein CR006, P-loop domainInterproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR052224FamilyTHAP domain-containing proteinInterproscan
IPR040000FamilyNucleolar protein 9Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR001313RepeatPumilio RNA-binding repeatInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR050130FamilyATP-dependent Clp protease/Chaperone ClpA/ClpBInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR006565DomainBromodomain associated domainInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR039460FamilySTAGA complex 65 subunit gammaInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR011697FamilyPeptidase C26Interproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR015527FamilyPeptidase C26, gamma-glutamyl hydrolaseInterproscan
IPR043244FamilyBiorientation of chromosomes in cell division protein 1-like 1Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR004099DomainPyridine nucleotide-disulphide oxidoreductase, dimerisation domainInterproscan
IPR050151FamilyClass-I pyridine nucleotide-disulfide oxidoreductaseInterproscan
IPR006258FamilyDihydrolipoamide dehydrogenaseInterproscan
IPR016156Homologous_superfamilyFAD/NAD-linked reductase, dimerisation domain superfamilyInterproscan
IPR023753DomainFAD/NAD(P)-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR46927AGAP005574-PAInterproscan
PTHR13102NUCLEOLAR PROTEIN 9Interproscan
PTHR11638ATP-DEPENDENT CLP PROTEASEInterproscan
PTHR28598STAGA COMPLEX 65 SUBUNIT GAMMAInterproscan
PTHR11315PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASEInterproscan
PTHR47391BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 LIKE 1Interproscan
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR22912DISULFIDE OXIDOREDUCTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000056Biological Processribosomal small subunit export from nucleusInterproscan
GO:0000447Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0030688Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0034605Biological Processcellular response to heatInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000124Cellular ComponentSAGA complexInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0008242Molecular Functionomega peptidase activityInterproscan
GO:0005773Cellular ComponentvacuoleInterproscan
GO:0034722Molecular Functiongamma-glutamyl-peptidase activityInterproscan
GO:0046900Biological Processtetrahydrofolylpolyglutamate metabolic processInterproscan
GO:0004148Molecular Functiondihydrolipoyl dehydrogenase activityInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23204THAP2; THAP domain-containing protein 2-Exosomeko04147deepkoala
Chromosome and associated proteinsko03036deepkoala
Chromosome and associated proteinsko03036deepkoala

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