Gene detail

Detailed information of g374.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KZY84992.1, hypothetical protein A3743_20095 [Oleiphilus sp. HI0072]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10484	Type I restriction enzyme EcoR124I/EcoR124II methylase subunit OS=Escherichia coli OX=562 GN=hsdM PE=1 SV=1
Q47163	Type I restriction enzyme EcoprrI methylase subunit OS=Escherichia coli OX=562 GN=hsdM PE=3 SV=1
B9MQ33	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320) OX=521460 GN=clpX PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0003108 (this species only)
Orthogroup (gene family)	OG0003442 (this species only)
Orthogroup (gene family)	OG0004296 (this species only)
Orthogroup (gene family)	OG0005209 (this species only)
Orthogroup (gene family)	OG0005693 (this species only)
Orthogroup (gene family)	OG0010796 (this species only)
Orthogroup (gene family)	OG0012408 (this species only)
Orthogroup (gene family)	OG0023238 (this species only)
Orthogroup (gene family)	OG0059759 (this species only)
Orthogroup (gene family)	OG0080432 (this species only)
Orthogroup (gene family)	OG0172616 (this species only)
Orthogroup (gene family)	OG0173421 (this species only)
Orthogroup (gene family)	OG0174096 (this species only)
Orthogroup (gene family)	OG0174675 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02384 all species →	N6_Mtase	N-6 DNA Methylase	Family	Interproscan
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan
PF06689 all species →	zf-C4_ClpX	ClpX C4-type zinc finger	Domain	Interproscan
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR052583 all species →	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR003356 all species →	Domain	DNA methylase, adenine-specific	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan
IPR046425 all species →	Family	Clp protease, ATP-binding subunit ClpX, bacteria	Interproscan
IPR010603 all species →	Domain	Zinc finger, ClpX C4-type	Interproscan
IPR004487 all species →	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR038366 all species →	Homologous_superfamily	Zinc finger, ClpX C4-type superfamily	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050052 all species →	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan
IPR031101 all species →	Family	RNA polymerase-associated protein Ctr9	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45865 all species →	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan
PTHR48102 all species →	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan
PTHR14027 all species →	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan
GO:0004652 all species →	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008170 all species →	Molecular Function	N-methyltransferase activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0009376 all species →	Cellular Component	HslUV protease complex	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03544	clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX	-	Chaperones and folding catalysts	ko03110	deepkoala
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.