Gene detail

Detailed information of g374.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KZY84992.1, hypothetical protein A3743_20095 [Oleiphilus sp. HI0072]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P10484	Type I restriction enzyme EcoR124I/EcoR124II methylase subunit OS=Escherichia coli OX=562 GN=hsdM PE=1 SV=1
Q47163	Type I restriction enzyme EcoprrI methylase subunit OS=Escherichia coli OX=562 GN=hsdM PE=3 SV=1
B9MQ33	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320) OX=521460 GN=clpX PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF01549	ShK	ShK domain-like	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02384	N6_Mtase	N-6 DNA Methylase	Family	Interproscan
PF10431	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan
PF06689	zf-C4_ClpX	ClpX C4-type zinc finger	Domain	Interproscan
PF07724	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433	Domain	Zinc finger, ZZ-type	Interproscan
IPR043145	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR050774	Family	KCMF1 and Dystrophin	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR052583	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR003356	Domain	DNA methylase, adenine-specific	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR019489	Domain	Clp ATPase, C-terminal	Interproscan
IPR046425	Family	Clp protease, ATP-binding subunit ClpX, bacteria	Interproscan
IPR010603	Domain	Zinc finger, ClpX C4-type	Interproscan
IPR004487	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR038366	Homologous_superfamily	Zinc finger, ClpX C4-type superfamily	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050052	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan
IPR031101	Family	RNA polymerase-associated protein Ctr9	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR45865	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan
PTHR48102	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan
PTHR14027	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0099536	Biological Process	synaptic signaling	Interproscan
GO:0004652	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008170	Molecular Function	N-methyltransferase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0009376	Cellular Component	HslUV protease complex	Interproscan
GO:0051301	Biological Process	cell division	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Chaperones and folding catalysts	ko03110	deepkoala
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala