Gene detail

Detailed information of g375.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBU0500267.1, Fic family protein [Gammaproteobacteria bacterium]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P44088	Probable protein adenylyltransferase HI_0977 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0977 PE=3 SV=1
Q7DDR9	Protein adenylyltransferase NmFic OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=NMB0255 PE=1 SV=1
Q62717	Calcium-dependent secretion activator 1 OS=Rattus norvegicus OX=10116 GN=Cadps PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000411 (this species only)
Orthogroup (gene family)	OG0002192 (this species only)
Orthogroup (gene family)	OG0002381 (this species only)
Orthogroup (gene family)	OG0002665 (this species only)
Orthogroup (gene family)	OG0003049 (this species only)
Orthogroup (gene family)	OG0003945 (this species only)
Orthogroup (gene family)	OG0004747 (this species only)
Orthogroup (gene family)	OG0005877 (this species only)
Orthogroup (gene family)	OG0015148 (this species only)
Orthogroup (gene family)	OG0018749 (this species only)
Orthogroup (gene family)	OG0019281 (this species only)
Orthogroup (gene family)	OG0059843 (this species only)
Orthogroup (gene family)	OG0170693 (this species only)
Orthogroup (gene family)	OG0172768 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05698 all species →	Trigger_C	Bacterial trigger factor protein (TF) C-terminus	Family	Interproscan
PF05697 all species →	Trigger_N	Bacterial trigger factor protein (TF)	Family	Interproscan
PF11547 all species →	E3_UbLigase_EDD	E3 ubiquitin ligase EDD	Domain	Interproscan
PF06292 all species →	MUN	MUN domain	Repeat	Interproscan
PF13837 all species →	Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	Domain	Interproscan
PF02661 all species →	Fic	Fic/DOC family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF21058 all species →	Stereocilin	Stereocilin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027304 all species →	Homologous_superfamily	Trigger factor/SurA domain superfamily	Interproscan
IPR005215 all species →	Family	Trigger factor	Interproscan
IPR036611 all species →	Homologous_superfamily	Trigger factor ribosome-binding domain superfamily	Interproscan
IPR037041 all species →	Homologous_superfamily	Trigger factor, C-terminal domain superfamily	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR008880 all species →	Domain	Trigger factor, C-terminal	Interproscan
IPR008881 all species →	Domain	Trigger factor, ribosome-binding, bacterial	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR024725 all species →	Domain	E3 ubiquitin-protein ligase UBR5, ubiquitin-associated domain	Interproscan
IPR010439 all species →	Domain	MUN domain	Interproscan
IPR014770 all species →	Domain	Munc13 homology 1	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR033227 all species →	Family	Calcium-dependent secretion activator	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR044822 all species →	Domain	Myb/SANT-like DNA-binding domain 4	Interproscan
IPR003812 all species →	Domain	Fido domain	Interproscan
IPR036597 all species →	Homologous_superfamily	Fido-like domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR026664 all species →	Family	Stereocilin-related	Interproscan
IPR048992 all species →	Domain	Stereocilin, LRR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30560 all species →	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	Interproscan
PTHR46276 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Interproscan
PTHR12166 all species →	CALCIUM-DEPENDENT SECRETION ACTIVATOR	Interproscan
PTHR39560 all species →	PROTEIN ADENYLYLTRANSFERASE FIC-RELATED	Interproscan
PTHR21254 all species →	UNCHARACTERIZED	Interproscan
PTHR47272 all species →	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR23412 all species →	STEREOCILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0043335 all species →	Biological Process	protein unfolding	Interproscan
GO:0044183 all species →	Molecular Function	protein folding chaperone	Interproscan
GO:0051083 all species →	Biological Process	'de novo' cotranslational protein folding	Interproscan
GO:0061077 all species →	Biological Process	chaperone-mediated protein folding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0090263 all species →	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016079 all species →	Biological Process	synaptic vesicle exocytosis	Interproscan
GO:1990504 all species →	Biological Process	dense core granule exocytosis	Interproscan
GO:0051302 all species →	Biological Process	regulation of cell division	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061511 all species →	Biological Process	centriole elongation	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03545	tig; trigger factor	-	Protein processing	-	deepkoala
K04095	fic, FICD, HYPE; cell filamentation protein, protein adenylyltransferase	EC:2.7.7.108	Chromosome and associated proteins	ko03036	deepkoala
K19933	CADPS; calcium-dependent secretion activator	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.