Gene detail

Detailed information of g3765.t2 in Acropora digitifera

Genomic Location: chr2Alt:17178052...17194976
NR annotation: XP_029206984.2, A disintegrin and metalloproteinase with thrombospondin motifs 6-like isoform X2 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3765.t2

ATGCTCATAGCCGTGAAACCCAAGTCACGCTTGAATGCAGCTCTTACGGACAAGCAGGGAATATGCATGAAAACTCTTTATTTAGTCTCCACTGTTTTTTGTTCATTTATGGCTCTCACACTGTGGACTATCCTACTTCTTTTCATTCCCCAATGCTTTTCACAATCGTTTCAGTGGCGCAGGTCACCACAAGCAGACCGCTGGGGAGCCTGGAGCGTTTGGGGTCCCTGCAGCAGATCTTGTGGTGGAGGGACTACAATCAGAACGAGGCAGTGTTTTGTTTCATCTCGAACTCCAAGCCCGCCTAGATATGTACTGGAAGTGTACAGACAAAACAGCCAAAGGCGGGGAAATTGTCATGGTACAACAACACAATACGGCACGTGTAACACGCAGGAATGTTATAAACGTCCAATAGTTACTCGCAAAATGGCTATTCAGGCCAGAGCTGTGCAGTGTAGCAAGTTCAACAATGTTTCCTTCAATGGATATTTCTTCACCTGGATGCCATTCTTAAGAGCGAAGACTATTCACAAGGATGAGTGTCAACTCAATTGTCTGGCCAAAGGACATATGTTCTTCCTTCGCCTCTCACCCAAGGTCAAGGACGGAACACCCTGCTTTACTGATTTGAAAAAAGTCTGCATTGATGGAAAATGCCAGGAGTTGCCGCCAGAATGTAAAAATGGTGGGTGTTTCGTGTCCAAACCCACAGTAGCTCCAAAGCAAAGGCGGTCTGGCTTGTTCACTTACAAGGACGTTCCACGAGGAAGGTTAGTTTTAGGCTACAATCCTGTAATCACAATCCCTGCTGGTGCAACGAAGATTAACGTTACAGAGATCCGAAGAAGCAAAAACTTTCTGGCTCTCAAATCTCATGAATCAACTAAATACTATATCAATGGGAATTGGGTTATTGATTTGCCAAAGGGATACACGGTGGCCGGCACGACGTTTTATTATTCAAGACCTCGTAGAAGTAACGAAAAGGAAGAGTCGCTTATAGCTGATGGACCGACCACAGAAGATCTGGATATTATGCTTCTCTATCAAGATGACGAGCCGCGGATTATGTATTCATATTTCCTTCCCAAAAACATGCTGAGTACACAGAAAAAGAACAGACTGCAACCCGCGGAACCTGCGCCAGTTGGTAGCCGAGGCTTATATGTTCAACAACCTACTCAACCCACACCCAGTGGACCGACCTATGCTTGGAAGCTGACAGGGTTCTCTCAGTGCAGCCACTCTTGTGCTGGAGGAACTCAGACAACTGCTCACCAGTGTATTTCGTCGGCTGACAACACGATTGTTGTAGAATCCTCGTGTGCGCGGGACTCAAAGCCAGCACCTAGACAGAGAGTATGCAATTTGCAGCCTTGCGCACCCAGGTGGGAGCCTGGTACTTGGGGTAGATGTTCAAGGACATGTGGAGGTGGTCTACAAATCAGAAGCCTTTTGTGCAAACAACTTGTCGATAGTAACGGAAGAAGACACCATCGATTGCTGCCAATCAGCTACTGTCGTCAGTGGGGAAGACCCGCCGCGAGCCGCAGCTGTAATTTACAGCGGTGCCCTCTACCAGCCAATTGGACAGTCGGTGAATGGAGCGAGTGTTCTGTAACTTGCGAAAAAGGACACAAACAGAGGATCGTGCGATGTGTGAACATCAACAATCAACGGGTCAATGAAAGATTGTGCAGGCAGAGTCCTAAGCCGCCAGTGACTGTGTCTTGCTTTACAGGATCATGCAAGACTGAATGGTTCACTAGCCACAAATGGTCGAAGTGTTCCGTTCCTTGTGGCAAAGGACAGCAAAGTCGTGCTGTGTTCTGTGGTAGGAAGGGAGGCCATACCCTGACTTCTACTCACTGTTCTCAAAGCAAAAAGCCAGGTTCTACGAGATCATGCAACAGTGGCAAATGTCAGGCAAAGTGGGTTGCAACAGAGTGGAGTGAGTGTTCTGTAGATTGTGGAAAGGGAACACAGGTCAGGACAGTTTTTTGTGCAGGCAAAGTTGGAGGCAAATTTCAAGAACTTCCAGACCATGCTTGTTTACGAACCTCTAAACCAATAACTTCTAAACTGTGTGGAAACAACTCTTGCCAACCGCAGTGGTTCACATCACAATGGGGAGAGTGCTCAAGGTCGTGCAATGGTGGAAGCCAAACAAGATCGGTGATGTGTTTTGATCATAAAGGCCAAACATCCAGATACTGCAGCTCCAAAGACAAACCATTTCACTACCAACATTGCAATAGCAAGCCATGTCCAACATCACGAGGAAGAGTGGCACAATTTAAACCATGCAATGATATTTACAGCCATGGAATTTGTTTTTATGTCACTCAAGCAAACTTCTGTCGTTATTCACACTACAACCACATGTGTTGTAACAGTTGTCAAAGGAGAAGGCACTGA

Transcript

chr2Alt.g3765.t2

CATGAAGGGCCTATGAAGGAACCTCCCTGGAGCGAAGGGCCTTTTAAAAGTCATTTTCCGTGTCTCCGGTGAAAGCCAGAATTTTATCTGTCGATGATCCCATGGACGTTGTAGTGAAAAGCCGATATACCACTGCAATGTTATCTCTCAATCATTATTTTTTCTTTTAGAAATGTGCTACAAATTGACCGACGTTATGGGTAGAGTCGCGTGGTTTAAGCCTTTTAAAAACAGTTGACAGATTACGGCCATCAAAATATTTGGCATAACATGTGCTTTGATCCTTTTCTTTGAAATTTATTGTGGTTATCGGACCCAGCACTTGAATGTCAATGCCCTTAGCGAATGCTCATAGCCGTGAAACCCAAGTCACGCTTGAATGCAGCTCTTACGGACAAGCAGGGAATATGCATGAAAACTCTTTATTTAGTCTCCACTGTTTTTTGTTCATTTATGGCTCTCACACTGTGGACTATCCTACTTCTTTTCATTCCCCAATGCTTTTCACAATCGTTTCAGTGGCGCAGGTCACCACAAGCAGACCGCTGGGGAGCCTGGAGCGTTTGGGGTCCCTGCAGCAGATCTTGTGGTGGAGGGACTACAATCAGAACGAGGCAGTGTTTTGTTTCATCTCGAACTCCAAGCCCGCCTAGATATGTACTGGAAGTGTACAGACAAAACAGCCAAAGGCGGGGAAATTGTCATGGTACAACAACACAATACGGCACGTGTAACACGCAGGAATGTTATAAACGTCCAATAGTTACTCGCAAAATGGCTATTCAGGCCAGAGCTGTGCAGTGTAGCAAGTTCAACAATGTTTCCTTCAATGGATATTTCTTCACCTGGATGCCATTCTTAAGAGCGAAGACTATTCACAAGGATGAGTGTCAACTCAATTGTCTGGCCAAAGGACATATGTTCTTCCTTCGCCTCTCACCCAAGGTCAAGGACGGAACACCCTGCTTTACTGATTTGAAAAAAGTCTGCATTGATGGAAAATGCCAGGAGTTGCCGCCAGAATGTAAAAATGGTGGGTGTTTCGTGTCCAAACCCACAGTAGCTCCAAAGCAAAGGCGGTCTGGCTTGTTCACTTACAAGGACGTTCCACGAGGAAGGTTAGTTTTAGGCTACAATCCTGTAATCACAATCCCTGCTGGTGCAACGAAGATTAACGTTACAGAGATCCGAAGAAGCAAAAACTTTCTGGCTCTCAAATCTCATGAATCAACTAAATACTATATCAATGGGAATTGGGTTATTGATTTGCCAAAGGGATACACGGTGGCCGGCACGACGTTTTATTATTCAAGACCTCGTAGAAGTAACGAAAAGGAAGAGTCGCTTATAGCTGATGGACCGACCACAGAAGATCTGGATATTATGCTTCTCTATCAAGATGACGAGCCGCGGATTATGTATTCATATTTCCTTCCCAAAAACATGCTGAGTACACAGAAAAAGAACAGACTGCAACCCGCGGAACCTGCGCCAGTTGGTAGCCGAGGCTTATATGTTCAACAACCTACTCAACCCACACCCAGTGGACCGACCTATGCTTGGAAGCTGACAGGGTTCTCTCAGTGCAGCCACTCTTGTGCTGGAGGAACTCAGACAACTGCTCACCAGTGTATTTCGTCGGCTGACAACACGATTGTTGTAGAATCCTCGTGTGCGCGGGACTCAAAGCCAGCACCTAGACAGAGAGTATGCAATTTGCAGCCTTGCGCACCCAGGTGGGAGCCTGGTACTTGGGGTAGATGTTCAAGGACATGTGGAGGTGGTCTACAAATCAGAAGCCTTTTGTGCAAACAACTTGTCGATAGTAACGGAAGAAGACACCATCGATTGCTGCCAATCAGCTACTGTCGTCAGTGGGGAAGACCCGCCGCGAGCCGCAGCTGTAATTTACAGCGGTGCCCTCTACCAGCCAATTGGACAGTCGGTGAATGGAGCGAGTGTTCTGTAACTTGCGAAAAAGGACACAAACAGAGGATCGTGCGATGTGTGAACATCAACAATCAACGGGTCAATGAAAGATTGTGCAGGCAGAGTCCTAAGCCGCCAGTGACTGTGTCTTGCTTTACAGGATCATGCAAGACTGAATGGTTCACTAGCCACAAATGGTCGAAGTGTTCCGTTCCTTGTGGCAAAGGACAGCAAAGTCGTGCTGTGTTCTGTGGTAGGAAGGGAGGCCATACCCTGACTTCTACTCACTGTTCTCAAAGCAAAAAGCCAGGTTCTACGAGATCATGCAACAGTGGCAAATGTCAGGCAAAGTGGGTTGCAACAGAGTGGAGTGAGTGTTCTGTAGATTGTGGAAAGGGAACACAGGTCAGGACAGTTTTTTGTGCAGGCAAAGTTGGAGGCAAATTTCAAGAACTTCCAGACCATGCTTGTTTACGAACCTCTAAACCAATAACTTCTAAACTGTGTGGAAACAACTCTTGCCAACCGCAGTGGTTCACATCACAATGGGGAGAGTGCTCAAGGTCGTGCAATGGTGGAAGCCAAACAAGATCGGTGATGTGTTTTGATCATAAAGGCCAAACATCCAGATACTGCAGCTCCAAAGACAAACCATTTCACTACCAACATTGCAATAGCAAGCCATGTCCAACATCACGAGGAAGAGTGGCACAATTTAAACCATGCAATGATATTTACAGCCATGGAATTTGTTTTTATGTCACTCAAGCAAACTTCTGTCGTTATTCACACTACAACCACATGTGTTGTAACAGTTGTCAAAGGAGAAGGCACTGACACAACTTGTATGGATGAATGTGGAATGTCATGGACCAGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80T21	ADAMTS-like protein 4 OS=Mus musculus OX=10090 GN=Adamtsl4 PE=2 SV=1
Q4FZU4	ADAMTS-like protein 4 OS=Rattus norvegicus OX=10116 GN=Adamtsl4 PE=2 SV=1
Q6UY14	ADAMTS-like protein 4 OS=Homo sapiens OX=9606 GN=ADAMTSL4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR010909 all species →	Domain	PLAC	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23377	THSD4, ADAMTSL6; thrombospondin type-1 domain-containing protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.