Gene detail

Detailed information of g3771.t2 in Acropora digitifera

Genomic Location: chr2Alt:17291933...17300241
NR annotation: XP_029206978.2, uncharacterized protein LOC114970672 isoform X1 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3771.t2

ATGAGATCATCATTTGCAACATCTGTTTTATGGTTTGCAATAGTAAGCTTCTTTTGGACTGCTGACAGCTCTCCAGAAATGCAAGGTGTATTTCAGAACTTGGGAAACAAGAAAACACAACGATTTCAAGTTTACGAAGCAGTCAAAGGTTTTGATGTCTTCTTGCGGTTCTCTGCGTCAAAATGCACAGGGCAACTTGTGGAGATAACTAGCAGAGATAACAAGGAATTCTTGAGAATTACGCTCCTTGAAGTTGGTCCCATTCGTTTCTCATTCAATACCTACCTTGGTAGGGGACAGTTGGAATTTGGTATGCCCAAGAAAGGCAGTTTCTGTGACGGAAAAAGGCATGTTTTAGCGTTAAACATATTTCGAGGCGTCGTTTTTTATTACGTGGATCGGTCGCTACCGGCGAGATTCTACGTCTCAAGATTAGCGGCACCCTTTTCGAGCCCAGACAAGATTGTTCTGGGTAGAGGCCTCGAGGGATGCGTGTCTGGTGCTACTGTGATCAACCGCTTCAGCAAGACAGACGAGCACCGAATTACGTCATCCGGTGAATGTGCTCTCAGAGCAGAAACTACTTTGCGACCCACCACTGTTCCGACTACCTCAAGGCCAGACTTGACCTCTATCGTGATGGCAAGAAAGGTAGCAGCTTCCCAGCACTCGCCCAATCCAAAATGCGAACCATTGCCATTCGACGCTTGTAAAGGTCTTGGCTACAGTCATACACAGTTTCCGAATATACTCAAGCACAAGACATCTTACAACGCCGAAACTGAACTAAACACGCTTCTATCAAAGCTACAACCCAAGTGCTCTCTTAATCTCATTCCATTTTTGTGCCATTTGTTCTTTCCTCCATGTCCTCTGCCCCAGATCCCTGTTCCACCTTGTCAGTCCCTCTGTAAGAGTGTGGTAGAGGACTGTTCTCTGCTTGGGTTCAAGGATACATGGTCTCGACATGTGAGCTGTGAGCATTTCCCACGGATCGATGATAAGGAAGAGTGTTTCTTGGGTGACAAGAAAGTCGCTGCGAGGAGAACCACTGTGATAAAGGGCTCGACTGAGAAGAATCATAACCTCACGGAAACTACCTCGTTACTGGCGTTAAAGAGACTACAAGGAAAACACGCTCGATTTTCGAAACCAGTGCTCCCGATGACAGCGTCGGTTAACAAGATAAAAACCAAATGTAAAGGAATCGAAAAAACTCCTTCAAAAGAAGTAAAAGGCACCTGGACAAAATCTGCTTCTCCATCGAAAACAATACCTCCCTCGACAATTTCTGCCGAAACAAGAATGAATGAGTACCTTACAAATGCCACACAGTCCCCGGAAAAGGCACAAAGCTACTCACAGAAAGCTTCTTCTGTCACAAAACCAGTTGTCTCCTCAAAAGTTTCTGCTGTGACAACAATAAACACAACACAGTCTCCGCAAAAGGCACAAAGCTACTCACAGAAAGCCGCTTCTGTCACAAAACCAGTTCTCACATCAAAAGTTTCAGCTGTGACACCAATGAATGATGCAACGAGTCTCCCGAACCTGGAAAAGGAGTACTCGACGAAACACGTACCTTTGTCAGAATCAGTGCAGCACCCAACAGCTTCAACAGACACAACAATGAACGAGCAACAAAGAAATGAATCGAATCATAATCATGGCTCAACTTCAAAACCACTGAAACCATCAACGATTCAGATTAACAGCACAAGAACAACAGGGCAACCAGGAACTGAATCAGTGAACGAAAATGTCACCACAACGGGATTCCGACCCGAAAACATGACGACCCATTCGCGCTCATTGTTTGAAGCAGGGAAATGCGGCGAATTGCTGGGGTCCTCAGAGGGACAACTCACATCACCTGGTTACCCTGGTGAATATCCCCCAAGCACAACATGTAAATGGCTGATTTCATTATCTCAAGATTATCAAGAGATCATATTTACATTCCACAGTGTGTTTCTCGAGGAGGATCGAAATTGCGTGTACGATTACATCGCTGTCTATGACGTGTTGGAGAACCAAGTTGGTGAGCGATATTGCGGTTCCATCACGAGACCCATTAATAAACATGTCAGAGGCAATGTTGCGGTGGTGATCTTCCGCTCAGACTCCACGAACAGTAAAAAGGGATTCAGCCTTTCGTACAAAGCAAGCAAAAGCCGCACTCCACCCGAAATAAACACGTAA

Transcript

chr2Alt.g3771.t2

AATGTCCTAAGTAAGTGCTATAACCACATGTTTTCAGTCATTTTTTTTTTTATGAAATATGTTTTGCAACTGTGCTCTAAGAAGACGGAGTATTACCTTTCTAACATTATTTTTTGCGAAACATGTTTCCTGTTGGAGCCATTTGTCATCAACACTATTAATCATCAGGTAATGAGATCATCATTTGCAACATCTGTTTTATGGTTTGCAATAGTAAGCTTCTTTTGGACTGCTGACAGCTCTCCAGAAATGCAAGGTGTATTTCAGAACTTGGGAAACAAGAAAACACAACGATTTCAAGTTTACGAAGCAGTCAAAGGTTTTGATGTCTTCTTGCGGTTCTCTGCGTCAAAATGCACAGGGCAACTTGTGGAGATAACTAGCAGAGATAACAAGGAATTCTTGAGAATTACGCTCCTTGAAGTTGGTCCCATTCGTTTCTCATTCAATACCTACCTTGGTAGGGGACAGTTGGAATTTGGTATGCCCAAGAAAGGCAGTTTCTGTGACGGAAAAAGGCATGTTTTAGCGTTAAACATATTTCGAGGCGTCGTTTTTTATTACGTGGATCGGTCGCTACCGGCGAGATTCTACGTCTCAAGATTAGCGGCACCCTTTTCGAGCCCAGACAAGATTGTTCTGGGTAGAGGCCTCGAGGGATGCGTGTCTGGTGCTACTGTGATCAACCGCTTCAGCAAGACAGACGAGCACCGAATTACGTCATCCGGTGAATGTGCTCTCAGAGCAGAAACTACTTTGCGACCCACCACTGTTCCGACTACCTCAAGGCCAGACTTGACCTCTATCGTGATGGCAAGAAAGGTAGCAGCTTCCCAGCACTCGCCCAATCCAAAATGCGAACCATTGCCATTCGACGCTTGTAAAGGTCTTGGCTACAGTCATACACAGTTTCCGAATATACTCAAGCACAAGACATCTTACAACGCCGAAACTGAACTAAACACGCTTCTATCAAAGCTACAACCCAAGTGCTCTCTTAATCTCATTCCATTTTTGTGCCATTTGTTCTTTCCTCCATGTCCTCTGCCCCAGATCCCTGTTCCACCTTGTCAGTCCCTCTGTAAGAGTGTGGTAGAGGACTGTTCTCTGCTTGGGTTCAAGGATACATGGTCTCGACATGTGAGCTGTGAGCATTTCCCACGGATCGATGATAAGGAAGAGTGTTTCTTGGGTGACAAGAAAGTCGCTGCGAGGAGAACCACTGTGATAAAGGGCTCGACTGAGAAGAATCATAACCTCACGGAAACTACCTCGTTACTGGCGTTAAAGAGACTACAAGGAAAACACGCTCGATTTTCGAAACCAGTGCTCCCGATGACAGCGTCGGTTAACAAGATAAAAACCAAATGTAAAGGAATCGAAAAAACTCCTTCAAAAGAAGTAAAAGGCACCTGGACAAAATCTGCTTCTCCATCGAAAACAATACCTCCCTCGACAATTTCTGCCGAAACAAGAATGAATGAGTACCTTACAAATGCCACACAGTCCCCGGAAAAGGCACAAAGCTACTCACAGAAAGCTTCTTCTGTCACAAAACCAGTTGTCTCCTCAAAAGTTTCTGCTGTGACAACAATAAACACAACACAGTCTCCGCAAAAGGCACAAAGCTACTCACAGAAAGCCGCTTCTGTCACAAAACCAGTTCTCACATCAAAAGTTTCAGCTGTGACACCAATGAATGATGCAACGAGTCTCCCGAACCTGGAAAAGGAGTACTCGACGAAACACGTACCTTTGTCAGAATCAGTGCAGCACCCAACAGCTTCAACAGACACAACAATGAACGAGCAACAAAGAAATGAATCGAATCATAATCATGGCTCAACTTCAAAACCACTGAAACCATCAACGATTCAGATTAACAGCACAAGAACAACAGGGCAACCAGGAACTGAATCAGTGAACGAAAATGTCACCACAACGGGATTCCGACCCGAAAACATGACGACCCATTCGCGCTCATTGTTTGAAGCAGGGAAATGCGGCGAATTGCTGGGGTCCTCAGAGGGACAACTCACATCACCTGGTTACCCTGGTGAATATCCCCCAAGCACAACATGTAAATGGCTGATTTCATTATCTCAAGATTATCAAGAGATCATATTTACATTCCACAGTGTGTTTCTCGAGGAGGATCGAAATTGCGTGTACGATTACATCGCTGTCTATGACGTGTTGGAGAACCAAGTTGGTGAGCGATATTGCGGTTCCATCACGAGACCCATTAATAAACATGTCAGAGGCAATGTTGCGGTGGTGATCTTCCGCTCAGACTCCACGAACAGTAAAAAGGGATTCAGCCTTTCGTACAAAGCAAGCAAAAGCCGCACTCCACCCGAAATAAACACGTAAATTCTGACTGAGTGGGTGGACAAGTCGTGTGTGACCTTTTCTCAAGAGGACACTCAAATGAACATTATTTCGTAGAAAGCGCGCAGAACAGTTTATCAGTATACACGGCGCACTTTCTAAATATATCGAATCCCTTGCAGTTGAACTTTCAACTATTGTCACCTCTTTGTGTCAAGACTCATAATACGGTAAGATCTGTTTAAAAAAAAAAGTTGGAAACCAAAGATAGTATGTCAATTAATAAAACTTTTTTTTTTTTCTGGCTGTGACATAACAACAGAATACAGTATGCTTCATATTAGACAATATGTAATCTAAAATATCATGTAATTGTGTTAGAGGTAATTCAATTATATTTGCATACACTACGAGTACCCAATATGGAACCTGTTCAGTTAGCAAATGGCGCAGACGATAAAAGTCCAGTTTTCATCAATTATTTTTGCATGAGGTACTCTGAATAAGAGTAGGCCATTGTGAAAGTTAGTGCAAAGCGTGCTTCTTTGTAAGTGCAGAGCGATTTCTTTCAGGACATCGTAACTTTAGAGCGCCACTAATGGCTAAATAAACCTTTTTGTATTGTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70244	Cubilin OS=Rattus norvegicus OX=10116 GN=Cubn PE=1 SV=2
Q86UP6	CUB and zona pellucida-like domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CUZD1 PE=1 SV=1
Q9JLB4	Cubilin OS=Mus musculus OX=10090 GN=Cubn PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g3771.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.