Gene detail

Detailed information of g3774.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_044168657.1, DNA mismatch repair protein Mlh1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g3774.t1

ATGGCGGCAATCCCTACGATAAGGAAACTGGATGAGGCTGTTGTAAACCGAATTGCGGCTGGAGAAGTAATCCAAAGGCCTGCTAATGCACTTAAAGAAATGATAGAGAACTCTCTTGATGCAAAGGCTTCATCTATAACGGTGACTGTAAAATCTGGAGGATTGAAACTGCTACAGATACAGGACAACGGATGTGGAATCAGAAAGGAAGACATGGGAATTGTTTGTGAACGTTTTACAACGAGTAAACTCGTGAAATTTGAAGATCTGGGCTCCATTGCGACCTATGGTTTTCGAGGAGAAGCCCTGGCGAGCATAAGTCACGTTGCTCATGTCACAATCACGACAAGAACCGAGGAATCGCATTGTGCTTTCAAGGCAAGTTACTCGGATGGAAAACTTGTCCCTCCTCGGCCCGGTTTATCGGCGGACCCAAAGCCTTGTGCGGGTAATAAAGGGACGCAAATAACTGTGGAGGATTTGTTTTACAACGTGTCAACTCGAAGGAAAGCGTTAAAAAGCCCCGGCGAAGAATTTGCCAAAATTGCCGATGTTATGAGCAAGTATGCTATTCATAATTCGGGGGTTGCGTTTACGTTGAAGAAGCAAGGTGAAAGCATGGCAGATGTGAGAACGAGCAATGGTGCTTCAATTTTAGACAACATCCGTGCAATTTATGGAGCTGCAGTTGCCAGAGAATTGTTGGAAGTGAGCTGTGACAACCAAAGATTCGCGTTCAAAATGCACGGTTTCATTTCTAATGCCAATTATTCTGTCAAAAGGCTTCAGTTCCTCTTGTTTATCAATCACCGTCTTGTGGACTCGTCCGCTCTGAGGAAAGCAATAGAAACATTGTATGAGGCTTACATCCCTAAGAACAGCCACCCTTTTGTGTACGTCTCTCTGGAAATTGCACCAAATAATTTAGATGTCAATGTGCATCCCACCAAACACGAGGTCCACTTTTTGCATGAAGATTCAGTCATTGAAGCTGTTCAGAAGGCCTTTGAGGAAAAACTACTAGGGGCCAATTCTTCTCGAACTTACTACACCCAGACCCTTCTTCCTGCAGTCCCTGGTATAGATACATCTACAGTGACATCAGATGATGGAGGAAAATCAACTGCTGCTAAAGTTTATGCCCATCAAATGGTACGAACAGACAGCAGAGAGCAGACTCTGCATGCATTCCTACCTCCCAAGGATCACACGTCAGCAACAAAAAGCAAACCTCAGAGGCCTGCTGGTACAGAGGAACATGAACTTAGGAACATGGTCATTGGGGAACCAAGCACTTCTGGAAGATCCTCTCTGAATTTTGTCAACACTGATAAAGCCAAAAGCACAGAATCCCATCCAAGTGAAAAGACTGATATTGTTGGTGACAACTTTTCTGACAAACCTTCAGATCTTAAAAAGCCTAGGCTTGAAGAAAAAGCTGACAGAGTgacaaaaaattcaagcagCTCTGGTATTTACAGAGAAATTCATTTGACCAGTGTTTTGAGCCTTCGAAAAGCCATTGATGACAATCAacacaaaggaatgaaagagcTCTTTGAGGACCACAAATTTGTTGGCTGTGTCAATAAATCCTTGGCTCTTGTCCAACACAGTACAAAACTGTTCCTGGCAAATGTCACTACTCTTAGCAAAGAACTCTTCTACCAGATCATCATGTTTAAGTTTGGCAACTTTGACTTTCTGAGGCTGTCTGAACCAGCTCCAATTTATGAGCTGGCCTTGCTAGCCTTAGACTGCAAAGACAGTGGATGGACTGAGGCTGATGGGCCTAAAGATGAACTGGCAACCTACATTGTCAATTTACTAAAAGGCAAAGCAATCATGCTCCTggattatttttctttggaaataGATAAAGAAGGTTGTATTTTGTCGTTGCCGCTACTGTTGGATGGTTTCACGCCAAATCTCAATGGCTTACCAATGTTTGTGCTTCGACTGGCTACAGAGGTAGACTGGGACAGTGAAGAGGGGTGCTTCTGTACCTTCGGACAGGAATGCAGTAGGTTCTATGCATTCAAGCCAGATCCTTATCAGGCAGATGAGGATGCACAGGACTCTGATGCTGCAACACCATCAAAGCGTTCTTGGCAGTGGACAGTGGAGCATGTATTGTTCCCTGCATTTCGCACAGGGCTTGTGCCCCCAAACCACTTCTCTGAAGATGGGACTCTTCTGCAAATAGCAAACCTACCTGACTTGTACAAAGTGTTTGAAAGGTGTTGA

Transcript

g3774.t1

Protein

Uniprot

Uniprot term	Description
P40692	DNA mismatch repair protein Mlh1 OS=Homo sapiens OX=9606 GN=MLH1 PE=1 SV=1
Q9JK91	DNA mismatch repair protein Mlh1 OS=Mus musculus OX=10090 GN=Mlh1 PE=1 SV=2
P97679	DNA mismatch repair protein Mlh1 OS=Rattus norvegicus OX=10116 GN=Mlh1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01119	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF16413	Mlh1_C	DNA mismatch repair protein Mlh1 C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014762	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR013507	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR032189	Domain	DNA mismatch repair protein Mlh1, C-terminal	Interproscan
IPR002099	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0032389	Cellular Component	MutLalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08734	MLH1; DNA mismatch repair protein MLH1	-	DNA repair and recombination proteins	ko03400	deepkoala