Detailed information of g378.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CCK74846.1, Type I restriction enzyme EcoR124II/ type I site-specific deoxyribonuclease [Oleispira antarctica RB-8]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10486Type I restriction enzyme EcoR124I/EcoR124II endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=2
Q5HK76Type I restriction enzyme SepRPIP endonuclease subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=hsdR PE=3 SV=1
Q99X26Type I restriction enzyme SauMu50ORF195P endonuclease subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=hsdR PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyETS

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10551MULEMULE transposase domainDomainInterproscan
PF00005ABC_tranABC transporterDomainInterproscan
PF12848ABC_tran_XtnABC transporterDomainInterproscan
PF08168NUC205Nucleolar protein 11 N-terminal domainDomainInterproscan
PF18766SWI2_SNF2SWI2/SNF2 ATPaseFamilyInterproscan
PF12008EcoR124_CType I restriction and modification enzyme - subunit R C terminalDomainInterproscan
PF04313HSDR_NType I restriction enzyme R protein N terminus (HSDR_N)FamilyInterproscan
PF00248Aldo_ket_redAldo/keto reductase familyDomainInterproscan
PF00178EtsEts-domainDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF14523Syntaxin_2Syntaxin-like proteinDomainInterproscan
PF17830STI1-HOP_DPSTI1/HOP, DP domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018289DomainMULE transposase domainInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR017871Conserved_siteABC transporter-like, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR051309FamilyABC transporter ABCF subfamily ATPaseInterproscan
IPR032781DomainABC-transporter extension domainInterproscan
IPR000836DomainPhosphoribosyltransferase domainInterproscan
IPR050120FamilyAdenine phosphoribosyltransferaseInterproscan
IPR029057Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan
IPR042859FamilyNucleolar protein 11Interproscan
IPR012584DomainNucleolar protein 11, N-terminal domainInterproscan
IPR004473FamilyRestriction endonuclease, type I, HsdRInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR040980DomainSWI2/SNF2 ATPaseInterproscan
IPR022625DomainType I restriction enzyme R protein, C-terminalInterproscan
IPR007409DomainRestriction endonuclease, type I, HsdR, N-terminalInterproscan
IPR051268FamilyType I restriction enzyme R subunitInterproscan
IPR036812Homologous_superfamilyNADP-dependent oxidoreductase domain superfamilyInterproscan
IPR023210DomainNADP-dependent oxidoreductase domainInterproscan
IPR018170Conserved_siteAldo/keto reductase, conserved siteInterproscan
IPR020471FamilyAldo-keto reductaseInterproscan
IPR000418DomainEts domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR046328FamilyETS familyInterproscan
IPR005829Conserved_siteSugar transporter, conserved siteInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR010989Homologous_superfamilySNAREInterproscan
IPR006011DomainSyntaxin, N-terminal domainInterproscan
IPR041243DomainSTI1/HOP, DP domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR052055FamilyHepadnavirus polymerase/reverse transcriptaseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47160PUTATIVE-RELATEDInterproscan
PTHR42855ABC TRANSPORTER ATP-BINDING SUBUNITInterproscan
PTHR11776ADENINE PHOSPHORIBOSYLTRANSFERASEInterproscan
PTHR15633UNCHARACTERIZEDInterproscan
PTHR30195TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE PROTEIN SUBUNIT M AND RInterproscan
PTHR11732ALDO/KETO REDUCTASEInterproscan
PTHR11849ETSInterproscan
PTHR23511SYNAPTIC VESICLE GLYCOPROTEIN 2Interproscan
PTHR45883HSC70-INTERACTING PROTEINInterproscan
PTHR33050REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003999Molecular Functionadenine phosphoribosyltransferase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0009035Molecular Functiontype I site-specific deoxyribonuclease activityInterproscan
GO:0009307Biological ProcessDNA restriction-modification systemInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0006304Biological ProcessDNA modificationInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0004032Molecular Functionaldose reductase (NADPH) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030544Molecular FunctionHsp70 protein bindingInterproscan
GO:0051085Biological Processchaperone cofactor-dependent protein refoldingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06158ABCF3; ATP-binding cassette, subfamily F, member 3-Prokaryotic defense systemko02048deepkoala
Translation factorsko03012deepkoala

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