Gene detail

Detailed information of g384.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_249035228.1, multicopper oxidase family protein [Pseudemcibacter aquimaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12570	Laccase-1 OS=Botryotinia fuckeliana OX=40559 GN=lcc1 PE=2 SV=3
S8FGV1	Laccase-2 OS=Fomitopsis schrenkii OX=2126942 GN=LCC2 PE=1 SV=1
Q09920	Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fio1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)
Orthogroup (gene family)	OG0000747 (this species only)
Orthogroup (gene family)	OG0001108 (this species only)
Orthogroup (gene family)	OG0003348 (this species only)
Orthogroup (gene family)	OG0003776 (this species only)
Orthogroup (gene family)	OG0004167 (this species only)
Orthogroup (gene family)	OG0006077 (this species only)
Orthogroup (gene family)	OG0012599 (this species only)
Orthogroup (gene family)	OG0018253 (this species only)
Orthogroup (gene family)	OG0080684 (this species only)
Orthogroup (gene family)	OG0171631 (this species only)
Orthogroup (gene family)	OG0171941 (this species only)
Orthogroup (gene family)	OG0172071 (this species only)
Orthogroup (gene family)	OG0172362 (this species only)
Orthogroup (gene family)	OG0173987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04152 all species →	Mre11_DNA_bind	Mre11 DNA-binding presumed domain	Domain	Interproscan
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan
PF00394 all species →	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF07731 all species →	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF07732 all species →	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00609 all species →	DAGK_acc	Diacylglycerol kinase accessory domain	Family	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF00781 all species →	DAGK_cat	Diacylglycerol kinase catalytic domain	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041796 all species →	Domain	Mre11 nuclease, N-terminal metallophosphatase domain	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR007281 all species →	Domain	Mre11, DNA-binding	Interproscan
IPR045208 all species →	Family	Initiation factor 4G	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR008972 all species →	Homologous_superfamily	Cupredoxin	Interproscan
IPR001117 all species →	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR011706 all species →	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR045087 all species →	Family	Multicopper oxidase	Interproscan
IPR011707 all species →	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR002355 all species →	Binding_site	Multicopper oxidase, copper-binding site	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017438 all species →	Homologous_superfamily	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Interproscan
IPR001206 all species →	Domain	Diacylglycerol kinase, catalytic domain	Interproscan
IPR000756 all species →	Domain	Diacylglycerol kinase, accessory domain	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR037607 all species →	Family	Diacylglycerol kinase	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR016064 all species →	Homologous_superfamily	NAD kinase/diacylglycerol kinase-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR010061 all species →	Family	Methylmalonate-semialdehyde dehydrogenase	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR10139 all species →	DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	Interproscan
PTHR23253 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan
PTHR11709 all species →	MULTI-COPPER OXIDASE	Interproscan
PTHR16112 all species →	METHYL-CPG BINDING PROTEIN, DROSOPHILA	Interproscan
PTHR11255 all species →	DIACYLGLYCEROL KINASE	Interproscan
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan
PTHR43866 all species →	MALONATE-SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0042138 all species →	Biological Process	meiotic DNA double-strand break formation	Interproscan
GO:0097552 all species →	Biological Process	mitochondrial double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281 all species →	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0010369 all species →	Cellular Component	chromocenter	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004143 all species →	Molecular Function	ATP-dependent diacylglycerol kinase activity	Interproscan
GO:0007205 all species →	Biological Process	obsolete protein kinase C-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0004491 all species →	Molecular Function	methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006210 all species →	Biological Process	thymine catabolic process	Interproscan
GO:0006574 all species →	Biological Process	valine catabolic process	Interproscan
GO:0018478 all species →	Molecular Function	malonate-semialdehyde dehydrogenase (acetylating) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00901	dgkA, DGK; diacylglycerol kinase (ATP)	EC:2.7.1.107	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.