Genomic Location: not available for this species
NR annotation: MYH57166.1, DNA recombination protein RmuC [Boseongicola sp. SB0675_bin_26]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q9I4U3 | DNA recombination protein RmuC homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rmuC PE=3 SV=1 |
| Q9JWG3 | DNA recombination protein RmuC homolog OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rmuC PE=3 SV=1 |
| Q9JXH2 | DNA recombination protein RmuC homolog OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=rmuC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000002 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000058 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000123 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000371 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001495 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004102 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004288 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006167 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007676 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008456 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009506 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0018296 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02646 all species → | RmuC | RmuC family | Family | Interproscan |
| PF14938 all species → | SNAP | Soluble NSF attachment protein, SNAP | Repeat | Interproscan |
| PF01390 all species → | SEA | SEA domain | Family | Interproscan |
| PF13359 all species → | DDE_Tnp_4 | DDE superfamily endonuclease | Domain | Interproscan |
| PF13499 all species → | EF-hand_7 | EF-hand domain pair | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003798 all species → | Family | DNA recombination RmuC | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR039494 all species → | Family | Factor VIII intron 22 protein | Interproscan |
| IPR036364 all species → | Homologous_superfamily | SEA domain superfamily | Interproscan |
| IPR000082 all species → | Domain | SEA domain | Interproscan |
| IPR027806 all species → | Domain | Harbinger transposase-derived nuclease domain | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR050145 all species → | Family | Calmodulin and Centrin Calcium-Binding Families | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30563 all species → | DNA RECOMBINATION PROTEIN RMUC | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR16797 all species → | FACTOR VIII-ASSOCIATED GENE 1 | Interproscan |
| PTHR22930 all species → | UNCHARACTERIZED | Interproscan |
| PTHR23050 all species → | CALCIUM BINDING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005769 all species → | Cellular Component | early endosome | Interproscan |
| GO:0099518 all species → | Biological Process | vesicle cytoskeletal trafficking | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0030234 all species → | Molecular Function | enzyme regulator activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02183 | CALM; calmodulin | - | Exosome | ko04147 | deepkoala |
| K09760 | rmuC; DNA recombination protein RmuC | - | Replication and repair | - | deepkoala |
| K20135 | F8A; factor VIII intron 22 protein | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
