Gene detail

Detailed information of g3875.t1 in Tripedalia maipoensis

Genomic Location: scaffold_15:5731301...5737923
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001319 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24215 all species →	RHO-GTPASE-ACTIVATING PROTEIN LRG1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008307 all species →	Molecular Function	structural constituent of muscle	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0042805 all species →	Molecular Function	actinin binding	Interproscan
GO:0045214 all species →	Biological Process	sarcomere organization	Interproscan
GO:0060537 all species →	Biological Process	muscle tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09377	CSRP; cysteine and glycine-rich protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.