Gene detail

Detailed information of g388.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCH2294997.1, DUF4254 domain-containing protein [SAR324 cluster bacterium]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q13098	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000063 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000120 (this species only)
Orthogroup (gene family)	OG0000156 (this species only)
Orthogroup (gene family)	OG0000191 (this species only)
Orthogroup (gene family)	OG0000589 (this species only)
Orthogroup (gene family)	OG0001016 (this species only)
Orthogroup (gene family)	OG0001827 (this species only)
Orthogroup (gene family)	OG0003722 (this species only)
Orthogroup (gene family)	OG0004960 (this species only)
Orthogroup (gene family)	OG0005173 (this species only)
Orthogroup (gene family)	OG0006256 (this species only)
Orthogroup (gene family)	OG0017066 (this species only)
Orthogroup (gene family)	OG0046203 (this species only)
Orthogroup (gene family)	OG0171261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF21151 all species →	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF14063 all species →	DUF4254	Protein of unknown function (DUF4254)	Family	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF05057 all species →	DUF676	Putative serine esterase (DUF676)	Family	Interproscan
PF12394 all species →	DUF3657	Protein FAM135	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR005829 all species →	Conserved_site	Sugar transporter, conserved site	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR048624 all species →	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR045251 all species →	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR025350 all species →	Family	Protein of unknown function DUF4254	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR002455 all species →	Family	GPCR family 3, GABA-B receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR033195 all species →	Family	Glycine/inosamine-phosphate amidinotransferase	Interproscan
IPR007751 all species →	Domain	Domain of unknown function DUF676, lipase-like	Interproscan
IPR022122 all species →	Family	Protein FAM135	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR044294 all species →	Family	Lipase-like	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24252 all species →	ACROSIN-RELATED	Interproscan
PTHR24064 all species →	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan
PTHR23030 all species →	PCD6 INTERACTING PROTEIN-RELATED	Interproscan
PTHR10519 all species →	GABA-B RECEPTOR	Interproscan
PTHR10488 all species →	GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL	Interproscan
PTHR12482 all species →	UNCHARACTERIZED	Interproscan
PTHR47526 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0071985 all species →	Biological Process	multivesicular body sorting pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004965 all species →	Molecular Function	G protein-coupled GABA receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007214 all species →	Biological Process	gamma-aminobutyric acid signaling pathway	Interproscan
GO:0038039 all species →	Cellular Component	G protein-coupled receptor heterodimeric complex	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015067 all species →	Molecular Function	amidinotransferase activity	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.