Gene detail

Detailed information of g389.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBU2512234.1, tRNA 2-selenouridine(34) synthase MnmH [bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8FK67	tRNA 2-selenouridine synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=selU PE=3 SV=2
B7UKI1	tRNA 2-selenouridine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=selU PE=3 SV=1
B7MQL5	tRNA 2-selenouridine synthase OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=selU PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000013 (this species only)
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000178 (this species only)
Orthogroup (gene family)	OG0000985 (this species only)
Orthogroup (gene family)	OG0002191 (this species only)
Orthogroup (gene family)	OG0003349 (this species only)
Orthogroup (gene family)	OG0005887 (this species only)
Orthogroup (gene family)	OG0006433 (this species only)
Orthogroup (gene family)	OG0013211 (this species only)
Orthogroup (gene family)	OG0016715 (this species only)
Orthogroup (gene family)	OG0024470 (this species only)
Orthogroup (gene family)	OG0032535 (this species only)
Orthogroup (gene family)	OG0059525 (this species only)
Orthogroup (gene family)	OG0173085 (this species only)
Orthogroup (gene family)	OG0173734 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF12110 all species →	Nup96	Nuclear protein 96	Domain	Interproscan
PF04096 all species →	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR017582 all species →	Family	tRNA 2-selenouridine synthase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050576 all species →	Family	Ciliary and flagellar integrity-associated protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050406 all species →	Family	FGGY Carbohydrate Kinase	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR036903 all species →	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR007230 all species →	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR037665 all species →	Family	Nucleoporin peptidase S59-like	Interproscan
IPR021967 all species →	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan
PTHR30401 all species →	TRNA 2-SELENOURIDINE SYNTHASE	Interproscan
PTHR45973 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	Interproscan
PTHR43095 all species →	SUGAR KINASE	Interproscan
PTHR23198 all species →	NUCLEOPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0043828 all species →	Molecular Function	tRNA 2-selenouridine synthase activity	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973 all species →	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0034398 all species →	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06917	selU, mnmH; tRNA 2-selenouridine synthase	EC:2.9.1.3	Transfer RNA biogenesis	ko03016	deepkoala
K11214	SHPK; sedoheptulokinase	EC:2.7.1.14	Pentose phosphate pathway	ko00030	deepkoala
K17550	PPP1R7, SDS22; protein phosphatase 1 regulatory subunit 7	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.