Detailed information of g389.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU2512234.1, tRNA 2-selenouridine(34) synthase MnmH [bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8FK67tRNA 2-selenouridine synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=selU PE=3 SV=2
B7UKI1tRNA 2-selenouridine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=selU PE=3 SV=1
B7MQL5tRNA 2-selenouridine synthase OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=selU PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF000027tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF00581RhodaneseRhodanese-like domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF00370FGGY_NFGGY family of carbohydrate kinases, N-terminal domainDomainInterproscan
PF12110Nup96Nuclear protein 96DomainInterproscan
PF04096Nucleoporin2Nucleoporin autopeptidaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR000832FamilyGPCR, family 2, secretin-likeInterproscan
IPR053231FamilyG-protein coupled receptor LN-TM7Interproscan
IPR017981DomainGPCR, family 2-like, 7TMInterproscan
IPR001763DomainRhodanese-like domainInterproscan
IPR036873Homologous_superfamilyRhodanese-like domain superfamilyInterproscan
IPR017582FamilytRNA 2-selenouridine synthaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050576FamilyCiliary and flagellar integrity-associated proteinInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR050406FamilyFGGY Carbohydrate KinaseInterproscan
IPR018484DomainCarbohydrate kinase FGGY, N-terminalInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR036903Homologous_superfamilyNuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyInterproscan
IPR007230DomainNuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainInterproscan
IPR037665FamilyNucleoporin peptidase S59-likeInterproscan
IPR021967DomainNuclear pore complex protein NUP96, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR45902LATROPHILIN RECEPTOR-LIKE PROTEIN AInterproscan
PTHR30401TRNA 2-SELENOURIDINE SYNTHASEInterproscan
PTHR45973PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATEDInterproscan
PTHR43095SUGAR KINASEInterproscan
PTHR23198NUCLEOPORINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166Biological Processcell surface receptor signaling pathwayInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0043828Molecular FunctiontRNA 2-selenouridine synthase activityInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006913Biological Processnucleocytoplasmic transportInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0000973Biological Processpost-transcriptional tethering of RNA polymerase II gene DNA at nuclear peripheryInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0008139Molecular Functionnuclear localization sequence bindingInterproscan
GO:0034398Biological Processtelomere tethering at nuclear peripheryInterproscan
GO:0044614Cellular Componentnuclear pore cytoplasmic filamentsInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11214SHPK; sedoheptulokinaseEC:2.7.1.14
Transfer RNA biogenesisko03016deepkoala
Protein phosphatases and associated proteinsko01009deepkoala
Pentose phosphate pathwayko00030deepkoala

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