Detailed information of g39.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH9852088.1, type II CRISPR RNA-guided endonuclease Cas9 [Alphaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6DRG7Protein phosphatase 1 regulatory subunit 12A OS=Danio rerio OX=7955 GN=ppp1r12a PE=2 SV=2
Q9DBR7Protein phosphatase 1 regulatory subunit 12A OS=Mus musculus OX=10090 GN=Ppp1r12a PE=1 SV=2
Q10728Protein phosphatase 1 regulatory subunit 12A OS=Rattus norvegicus OX=10116 GN=Ppp1r12a PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF01381HTH_3Helix-turn-helixDomainInterproscan
PF00717Peptidase_S24Peptidase S24-likeDomainInterproscan
PF07496zf-CWCW-type Zinc FingerDomainInterproscan
PF00855PWWPPWWP domainDomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF08397IMDIRSp53/MIM homology domainFamilyInterproscan
PF18541RuvC_IIIRuvC endonuclease subdomain 3DomainInterproscan
PF13395HNH_4HNH endonucleaseDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001387DomainCro/C1-type helix-turn-helix domainInterproscan
IPR015927DomainPeptidase S24/S26A/S26B/S26CInterproscan
IPR039418DomainLexA-likeInterproscan
IPR036286Homologous_superfamilyLexA/Signal peptidase-like superfamilyInterproscan
IPR010982Homologous_superfamilyLambda repressor-like, DNA-binding domain superfamilyInterproscan
IPR042778FamilyZinc finger CW-type PWWP domain protein ZCWPW1/ZCWPW2Interproscan
IPR011124DomainZinc finger, CW-typeInterproscan
IPR000313DomainPWWP domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR006553RepeatLeucine-rich repeat, cysteine-containing subtypeInterproscan
IPR027681FamilyI-BAR domain containing protein IRSp53/IRTKS/PinkbarInterproscan
IPR001452DomainSH3 domainInterproscan
IPR027267Homologous_superfamilyAH/BAR domain superfamilyInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR013606DomainIMD/I-BAR domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041383DomainRuvC endonuclease subdomain 3Interproscan
IPR028629FamilyCRISPR-associated endonuclease Cas9Interproscan
IPR033114DomainCas9-type HNH domainInterproscan
IPR003615DomainHNH nucleaseInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR051226FamilyProtein Phosphatase 1 Regulatory SubunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33064POL PROTEINInterproscan
PTHR46113SNAC DOMAIN-CONTAINING PROTEINInterproscan
PTHR40661-Interproscan
PTHR15999UNCHARACTERIZEDInterproscan
PTHR13318UNCHARACTERIZEDInterproscan
PTHR14206BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2Interproscan
PTHR24179PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0030838Biological Processpositive regulation of actin filament polymerizationInterproscan
GO:0051017Biological Processactin filament bundle assemblyInterproscan
GO:0051764Biological Processactin crosslink formationInterproscan
GO:2000251Biological Processobsolete positive regulation of actin cytoskeleton reorganizationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007009Biological Processplasma membrane organizationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0004857Molecular Functionenzyme inhibitor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0019208Molecular Functionphosphatase regulator activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06270PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A-Protein phosphatases and associated proteinsko01009deepkoala

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