Detailed information of g390.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: HIC06632.1, transketolase [Candidatus Lambdaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P51010Transketolase 1 OS=Xanthobacter flavus OX=281 GN=tkt PE=3 SV=2
P29277Transketolase OS=Cereibacter sphaeroides OX=1063 GN=tklB PE=3 SV=1
P56900Transketolase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=cbbT PE=3 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|NZF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12251SNAPC3snRNA-activating protein complex (SNAPc), subunit 3FamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13481AAA_25AAA domainDomainInterproscan
PF00735SeptinSeptinDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF02780Transketolase_CTransketolase, C-terminal domainDomainInterproscan
PF00456Transketolase_NTransketolase, thiamine diphosphate binding domainDomainInterproscan
PF02779Transket_pyrTransketolase, pyrimidine binding domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF000027tm_27 transmembrane receptor (Secretin family)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022042FamilysnRNA-activating protein complex, subunit 3Interproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR027032FamilyTwinkle-like proteinInterproscan
IPR007694DomainDNA helicase, DnaB-like, C-terminalInterproscan
IPR034154DomainArchaeal primase DnaG/twinkle-like, TOPRIM domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR030379DomainSeptin-type guanine nucleotide-binding (G) domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR033247FamilyTransketolase familyInterproscan
IPR029061Homologous_superfamilyThiamin diphosphate-binding foldInterproscan
IPR005474DomainTransketolase, N-terminalInterproscan
IPR009014Homologous_superfamilyTransketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain IIInterproscan
IPR005478FamilyTransketolase, bacterial-likeInterproscan
IPR049557Conserved_siteTransketolase conserved siteInterproscan
IPR033248DomainTransketolase, C-terminal domainInterproscan
IPR005475DomainTransketolase-like, pyrimidine-binding domainInterproscan
IPR020826Binding_siteTransketolase binding siteInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR036443Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR001876DomainZinc finger, RanBP2-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR003615DomainHNH nucleaseInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR052612FamilyAtrial Natriuretic Peptide Clearance ReceptorInterproscan
IPR017981DomainGPCR, family 2-like, 7TMInterproscan
IPR000832FamilyGPCR, family 2, secretin-likeInterproscan
IPR053231FamilyG-protein coupled receptor LN-TM7Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13421SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3Interproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12873T7-LIKE MITOCHONDRIAL DNA HELICASEInterproscan
PTHR18884SEPTINInterproscan
PTHR43522TRANSKETOLASEInterproscan
PTHR45766DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBERInterproscan
PTHR44755NATRIURETIC PEPTIDE RECEPTOR 3-RELATEDInterproscan
PTHR45902LATROPHILIN RECEPTOR-LIKE PROTEIN AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001006Molecular FunctionRNA polymerase III type 3 promoter sequence-specific DNA bindingInterproscan
GO:0001046Molecular Functioncore promoter sequence-specific DNA bindingInterproscan
GO:0003681Molecular Functionbent DNA bindingInterproscan
GO:0019185Cellular ComponentsnRNA-activating protein complexInterproscan
GO:0042795Biological ProcesssnRNA transcription by RNA polymerase IIInterproscan
GO:0042796Biological ProcesssnRNA transcription by RNA polymerase IIIInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006264Biological Processmitochondrial DNA replicationInterproscan
GO:0043139Molecular Function5'-3' DNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005940Cellular Componentseptin ringInterproscan
GO:0015630Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0031105Cellular Componentseptin complexInterproscan
GO:0032153Cellular Componentcell division siteInterproscan
GO:0034613Biological Processprotein localizationInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan
GO:0061640Biological Processcytoskeleton-dependent cytokinesisInterproscan
GO:0004802Molecular Functiontransketolase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006098Biological Processpentose-phosphate shuntInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0031297Biological Processreplication fork processingInterproscan
GO:0048478Biological Processobsolete replication fork protectionInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0017046Molecular Functionpeptide hormone bindingInterproscan
GO:0038023Molecular Functionsignaling receptor activityInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166Biological Processcell surface receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17680PEO1; twinkle proteinEC:5.6.2.3
Biosynthesis of ansamycinsko01051deepkoala
DNA repair and recombination proteinsko03400deepkoala
Mitochondrial biogenesisko03029deepkoala

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