Detailed information of g391.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: OGG96071.1, exodeoxyribonuclease VII large subunit [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_50_16]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q1I5K4Exodeoxyribonuclease 7 large subunit OS=Pseudomonas entomophila (strain L48) OX=384676 GN=xseA PE=3 SV=1
Q886X9Exodeoxyribonuclease 7 large subunit OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=xseA PE=3 SV=1
Q7N3K2Exodeoxyribonuclease 7 large subunit OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=xseA PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08542Rep_fac_CReplication factor C C-terminal domainDomainInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF000027tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF13742tRNA_anti_2OB-fold nucleic acid binding domainDomainInterproscan
PF02601Exonuc_VII_LExonuclease VII, large subunitFamilyInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan
PF00318Ribosomal_S2Ribosomal protein S2FamilyInterproscan
PF1612240S_SA_C40S ribosomal protein SA C-terminusFamilyInterproscan
PF00071RasRas familyDomainInterproscan
PF08355EF_assoc_1EF hand associatedFamilyInterproscan
PF08356EF_assoc_2EF hand associatedFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052575FamilySmall subunit processome component 20Interproscan
IPR013748DomainReplication factor C, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR008921Homologous_superfamilyDNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalInterproscan
IPR047854DomainReplication factor C, lid domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR050238FamilyDNA Replication and Repair Clamp Loader ComplexInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR000832FamilyGPCR, family 2, secretin-likeInterproscan
IPR017981DomainGPCR, family 2-like, 7TMInterproscan
IPR053231FamilyG-protein coupled receptor LN-TM7Interproscan
IPR000998DomainMAM domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR003753FamilyExonuclease VII, large subunitInterproscan
IPR025824DomainOB-fold nucleic acid binding domainInterproscan
IPR020579DomainExonuclease VII, large subunit, C-terminalInterproscan
IPR026516FamilyTHAP domain-containing protein 1/10Interproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR001865FamilySmall ribosomal subunit protein uS2Interproscan
IPR005707FamilySmall ribosomal subunit protein uS2, eukaryotic/archaealInterproscan
IPR023591Homologous_superfamilySmall ribosomal subunit protein uS2, flavodoxin-like domain superfamilyInterproscan
IPR027498FamilySmall ribosomal subunit protein uS2, eukaryoticInterproscan
IPR032281DomainSmall ribosomal subunit protein uS2, C-terminal domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR013566DomainMitochondrial Rho GTPase 1/3, EF hand associated, type-1Interproscan
IPR020860DomainMIRO domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR021181FamilyMitochondrial Rho GTPaseInterproscan
IPR003578FamilySmall GTPase RhoInterproscan
IPR013567DomainEF hand associated, type-2Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR039980FamilyMAP kinase-activating death domain proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17695UNCHARACTERIZEDInterproscan
PTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITInterproscan
PTHR45902LATROPHILIN RECEPTOR-LIKE PROTEIN AInterproscan
PTHR30008EXODEOXYRIBONUCLEASE 7 LARGE SUBUNITInterproscan
PTHR46600THAP DOMAIN-CONTAININGInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR1148940S RIBOSOMAL PROTEIN SAInterproscan
PTHR24072RHO FAMILY GTPASEInterproscan
PTHR13008MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003689Molecular FunctionDNA clamp loader activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005663Cellular ComponentDNA replication factor C complexInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166Biological Processcell surface receptor signaling pathwayInterproscan
GO:0006308Biological ProcessDNA catabolic processInterproscan
GO:0008855Molecular Functionexodeoxyribonuclease VII activityInterproscan
GO:0009318Cellular Componentexodeoxyribonuclease VII complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0000028Biological Processribosomal small subunit assemblyInterproscan
GO:0002181Biological Processcytoplasmic translationInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005741Cellular Componentmitochondrial outer membraneInterproscan
GO:0007005Biological Processmitochondrion organizationInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0031307Cellular Componentobsolete integral component of mitochondrial outer membraneInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0032483Biological Processregulation of Rab protein signal transductionInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02998RP-SAe, RPSA; small subunit ribosomal protein SAe-DNA repair and recombination proteinsko03400deepkoala
GTP-binding proteinsko04031deepkoala
DNA repair and recombination proteinsko03400deepkoala
Ribosomeko03011deepkoala

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