Detailed information of g392.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_028402959.1, 60S ribosomal protein L11-like isoform X2 [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q3T087Large ribosomal subunit protein uL5 OS=Bos taurus OX=9913 GN=RPL11 PE=2 SV=3
Q6QMZ8Large ribosomal subunit protein uL5 OS=Chinchilla lanigera OX=34839 GN=RPL11 PE=2 SV=3
P62913Large ribosomal subunit protein uL5 OS=Homo sapiens OX=9606 GN=RPL11 PE=1 SV=2
Gene familySubfamily
Transcription Factors Familyzf-BED
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02494HYRHYR domainDomainInterproscan
PF04031Las1Las1-like FamilyInterproscan
PF02892zf-BEDBED zinc fingerDomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF02138BeachBeige/BEACH domainFamilyInterproscan
PF02893GRAMGRAM domainDomainInterproscan
PF05648PEX11Peroxisomal biogenesis factor 11 (PEX11)FamilyInterproscan
PF13691Lactamase_B_4tRNase Z endonucleaseDomainInterproscan
PF12706Lactamase_B_2Beta-lactamase superfamily domainDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan
PF13837Myb_DNA-bind_4Myb/SANT-like DNA-binding domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00281Ribosomal_L5Ribosomal protein L5DomainInterproscan
PF00673Ribosomal_L5_Cribosomal L5P family C-terminusDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003410DomainHYR domainInterproscan
IPR007174FamilyLas1Interproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR003656DomainZinc finger, BED-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR000409DomainBEACH domainInterproscan
IPR036372Homologous_superfamilyBEACH domain superfamilyInterproscan
IPR023362DomainPH-BEACH domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050865FamilyBEACH Domain-ContainingInterproscan
IPR004182DomainGRAM domainInterproscan
IPR008733FamilyPeroxisomal biogenesis factor 11Interproscan
IPR026510FamilyPeroxisomal membrane protein 11C, metazoaInterproscan
IPR047151FamilyZinc phosphodiesterase ELAC protein 2-likeInterproscan
IPR027794DomaintRNase Z endonucleaseInterproscan
IPR001279DomainMetallo-beta-lactamaseInterproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan
IPR044822DomainMyb/SANT-like DNA-binding domain 4Interproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR051077FamilyCalcium-dependent LectinInterproscan
IPR002132FamilyLarge ribosomal subunit protein uL5Interproscan
IPR031310DomainLarge ribosomal subunit protein uL5, N-terminalInterproscan
IPR020929Conserved_siteLarge ribosomal subunit protein uL5, conserved siteInterproscan
IPR022803Homologous_superfamilyLarge ribosomal subunit protein uL5 domain superfamilyInterproscan
IPR031309DomainLarge ribosomal subunit protein uL5, C-terminalInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15002UNCHARACTERIZEDInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR13743BEIGE/BEACH-RELATEDInterproscan
PTHR20990PEROXISOMAL BIOGENESIS FACTOR 11Interproscan
PTHR12553ZINC PHOSPHODIESTERASE ELAC PROTEIN 2Interproscan
PTHR12558CELL DIVISION CYCLE 16,23,27Interproscan
PTHR39953RE54151PInterproscan
PTHR24024PULMONARY SURFACTANT-ASSOCIATED PROTEIN AInterproscan
PTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470Biological Processmaturation of LSU-rRNAInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0090730Cellular ComponentLas1 complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005778Cellular Componentperoxisomal membraneInterproscan
GO:0016559Biological Processperoxisome fissionInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0042781Molecular Function3'-tRNA processing endoribonuclease activityInterproscan
GO:0072684Biological Processobsolete mitochondrial tRNA 3'-trailer cleavage, endonucleolyticInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18953NSMAF, FAN; factor associated with neutral sphingomyelinase activation-Ribosomeko03011deepkoala
Transfer RNA biogenesisko03016deepkoala
Transportersko02000deepkoala
Sphingolipid signaling pathwayko04071deepkoala

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