Detailed information of g394.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NOU45104.1, tRNA dihydrouridine(20/20a) synthase DusA [Methyloglobulus sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9KUX9tRNA-dihydrouridine(20/20a) synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=dusA PE=3 SV=1
Q87L85tRNA-dihydrouridine(20/20a) synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=dusA PE=3 SV=1
Q8CWK7tRNA-dihydrouridine(20/20a) synthase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=dusA PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07996T4SSType IV secretion system proteinsFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF04665Pox_A32Poxvirus A32 proteinDomainInterproscan
PF12341Mcl1_midMinichromosome loss protein, Mcl1, middle regionRepeatInterproscan
PF07162B9-C2Ciliary basal body-associated, B9 proteinDomainInterproscan
PF08242Methyltransf_12Methyltransferase domainDomainInterproscan
PF00648Peptidase_C2Calpain family cysteine proteaseFamilyInterproscan
PF00168C2C2 domainDomainInterproscan
PF01067Calpain_IIICalpain large subunit, domain IIIDomainInterproscan
PF09380FERM_CFERM C-terminal PH-like domainDomainInterproscan
PF09379FERM_NFERM N-terminal domain DomainInterproscan
PF00102Y_phosphataseProtein-tyrosine phosphataseDomainInterproscan
PF00373FERM_MFERM central domainDomainInterproscan
PF05793TFIIF_alphaTranscription initiation factor IIF, alpha subunit (TFIIF-alpha)FamilyInterproscan
PF01207DusDihydrouridine synthase (Dus)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023220Homologous_superfamilyType IV secretion system, VirB5-domainInterproscan
IPR014158FamilyType IV secretion system, VirB5Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR006758FamilyPoxvirus A32Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR022100DomainMinichromosome loss protein Mcl1, middle regionInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR010796FamilyB9-type C2 domainInterproscan
IPR013217DomainMethyltransferase type 12Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR026113FamilytRNA N(3)-methylcytidine methyltransferase METTL2/6/8-likeInterproscan
IPR000008DomainC2 domainInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR050420FamilyCalpainInterproscan
IPR001300DomainPeptidase C2, calpain, catalytic domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR000169Active_siteCysteine peptidase, cysteine active siteInterproscan
IPR036213Homologous_superfamilyCalpain large subunit, domain III superfamilyInterproscan
IPR022683DomainPeptidase C2, calpain, domain IIIInterproscan
IPR033883DomainCalpain subdomain IIIInterproscan
IPR022684FamilyPeptidase C2, calpain familyInterproscan
IPR022682DomainPeptidase C2, calpain, large subunit, domain IIIInterproscan
IPR018980DomainFERM, C-terminal PH-like domainInterproscan
IPR018979DomainFERM, N-terminalInterproscan
IPR041782DomainPTPN14/21, FERM domain C-lobeInterproscan
IPR000242DomainTyrosine-specific protein phosphatase, PTPase domainInterproscan
IPR019748DomainFERM central domainInterproscan
IPR003595DomainProtein-tyrosine phosphatase, catalyticInterproscan
IPR016130Active_siteProtein-tyrosine phosphatase, active siteInterproscan
IPR014352Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR019749DomainBand 4.1 domainInterproscan
IPR029021Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR000387DomainTyrosine-specific protein phosphatases domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR035963Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR000299DomainFERM domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR008851FamilyTranscription initiation factor IIF, alpha subunitInterproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR035587DomainDUS-like, FMN-binding domainInterproscan
IPR004653FamilytRNA-dihydrouridine(20/20a) synthaseInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR001269FamilytRNA-dihydrouridine synthaseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR31511PROTEIN CBG23764Interproscan
PTHR19932WD REPEAT AND HMG-BOX DNA BINDING PROTEINInterproscan
PTHR12968B9 DOMAIN-CONTAININGInterproscan
PTHR22809METHYLTRANSFERASE-RELATEDInterproscan
PTHR10183CALPAINInterproscan
PTHR45706TYROSINE-PROTEIN PHOSPHATASEInterproscan
PTHR13011TFIIF-ALPHAInterproscan
PTHR42907FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0043596Cellular Componentnuclear replication forkInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0036038Cellular ComponentMKS complexInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0004198Molecular Functioncalcium-dependent cysteine-type endopeptidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0004725Molecular Functionprotein tyrosine phosphatase activityInterproscan
GO:0006470Biological Processprotein dephosphorylationInterproscan
GO:0016311Biological ProcessdephosphorylationInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0032968Biological Processpositive regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0001096Molecular FunctionTFIIF-class transcription factor complex bindingInterproscan
GO:0005674Cellular Componenttranscription factor TFIIF complexInterproscan
GO:0016251Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0002943Biological ProcesstRNA dihydrouridine synthesisInterproscan
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activityInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00599METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6EC:2.1.1.-
Transfer RNA biogenesisko03016deepkoala
Protein phosphatases and associated proteinsko01009deepkoala
Peptidases and inhibitorsko01002deepkoala
Cilium and associated proteinsko03037deepkoala
Transfer RNA biogenesisko03016deepkoala

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