Detailed information of g396.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU2512424.1, fumarate reductase/succinate dehydrogenase flavoprotein subunit [bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P08065Succinate dehydrogenase flavoprotein subunit OS=Bacillus subtilis (strain 168) OX=224308 GN=sdhA PE=1 SV=4
P44894Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=frdA PE=3 SV=1
V3TQ67Fumarate reductase flavoprotein subunit OS=Serratia sp. (strain ATCC 39006) OX=104623 GN=frdA PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF08647BRE1BRE1 E3 ubiquitin ligaseCoiled-coilInterproscan
PF00535Glycos_transf_2Glycosyl transferase family 2FamilyInterproscan
PF20499DUF6729Domain of unknown function (DUF6729)DomainInterproscan
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan
PF02910Succ_DH_flav_CFumarate reductase flavoprotein C-termDomainInterproscan
PF00890FAD_binding_2FAD binding domainFamilyInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR037386FamilyCoiled-coil domain-containing protein 40Interproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR001173DomainGlycosyltransferase 2-likeInterproscan
IPR046616DomainDomain of unknown function DUF6729Interproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR050274FamilyNuclear hormone receptor family NR2 subfamilyInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR030664FamilyFAD-dependent oxidoreductase SdhA/FrdA/AprAInterproscan
IPR015939DomainFumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalInterproscan
IPR003953DomainFAD-dependent oxidoreductase 2, FAD binding domainInterproscan
IPR011280FamilySuccinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteriaInterproscan
IPR027477Homologous_superfamilySuccinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamilyInterproscan
IPR037099Homologous_superfamilyFumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR16275COILED-COIL DOMAIN-CONTAINING PROTEIN 40Interproscan
PTHR22916GLYCOSYLTRANSFERASEInterproscan
PTHR24401SI:CH211-243P7.3-RELATEDInterproscan
PTHR24083NUCLEAR HORMONE RECEPTORInterproscan
PTHR11632SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNITInterproscan
PTHR33244INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR11467HISTONE H1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0035082Biological Processaxoneme assemblyInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0000104Molecular Functionsuccinate dehydrogenase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0009055Molecular Functionelectron transfer activityInterproscan
GO:0009061Biological Processanaerobic respirationInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030261Biological Processchromosome condensationInterproscan
GO:0031492Molecular Functionnucleosomal DNA bindingInterproscan
GO:0045910Biological Processnegative regulation of DNA recombinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11275H1_5; histone H1/5-Legionellosisko05134deepkoala
Chromosome and associated proteinsko03036deepkoala

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