Gene detail

Detailed information of g397.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MAZ74960.1, galactitol-1-phosphate 5-dehydrogenase [Deltaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06004	Sorbitol dehydrogenase OS=Bacillus subtilis (strain 168) OX=224308 GN=gutB PE=1 SV=3
Q86ZV0	D-xylulose reductase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=xdhA PE=1 SV=2
P39400	L-galactonate-5-dehydrogenase OS=Escherichia coli (strain K12) OX=83333 GN=lgoD PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000058 (this species only)
Orthogroup (gene family)	OG0000104 (this species only)
Orthogroup (gene family)	OG0000459 (this species only)
Orthogroup (gene family)	OG0002289 (this species only)
Orthogroup (gene family)	OG0002510 (this species only)
Orthogroup (gene family)	OG0003341 (this species only)
Orthogroup (gene family)	OG0003812 (this species only)
Orthogroup (gene family)	OG0006324 (this species only)
Orthogroup (gene family)	OG0034448 (this species only)
Orthogroup (gene family)	OG0059452 (this species only)
Orthogroup (gene family)	OG0059617 (this species only)
Orthogroup (gene family)	OG0059749 (this species only)
Orthogroup (gene family)	OG0172722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05832 all species →	DUF846	Eukaryotic protein of unknown function (DUF846)	Family	Interproscan
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF06421 all species →	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan
PF02445 all species →	NadA	Quinolinate synthetase A protein	Family	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR008564 all species →	Family	Golgi apparatus membrane protein TVP23-like	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR006297 all species →	Family	Elongation factor 4	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR013842 all species →	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR036094 all species →	Homologous_superfamily	Quinolinate synthetase A superfamily	Interproscan
IPR027477 all species →	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR003473 all species →	Family	Quinolinate synthetase A	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR038363 all species →	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR035654 all species →	Domain	Elongation factor 4, domain IV	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR052273 all species →	Family	Peptidyl-prolyl cis-trans isomerase FKBP	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR051057 all species →	Family	Phosphoinositide phospholipase C domain-containing protein	Interproscan
IPR042158 all species →	Family	PI-PLC X domain-containing protein 1/2/3	Interproscan
IPR050129 all species →	Family	Zinc-containing alcohol dehydrogenase	Interproscan
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10036 all species →	CD59 GLYCOPROTEIN	Interproscan
PTHR13019 all species →	UNCHARACTERIZED	Interproscan
PTHR43512 all species →	TRANSLATION FACTOR GUF1-RELATED	Interproscan
PTHR46222 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14	Interproscan
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan
PTHR13593 all species →	UNCHARACTERIZED	Interproscan
PTHR43401 all species →	L-THREONINE 3-DEHYDROGENASE	Interproscan
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0008987 all species →	Molecular Function	quinolinate synthetase A activity	Interproscan
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01771	plc; 1-phosphatidylinositol phosphodiesterase	EC:4.6.1.13	Inositol phosphate metabolism	ko00562	deepkoala
K09577	FKBP14; FK506-binding protein 14	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala
K26752	TVP23; golgi apparatus membrane protein TVP23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.