Detailed information of g398.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH2285442.1, histidinol dehydrogenase [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q46N53Sulfopropanediol 3-dehydrogenase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=hpsN PE=1 SV=1
Q4FMH0Histidinol dehydrogenase homolog OS=Pelagibacter ubique (strain HTCC1062) OX=335992 GN=SAR11_0801 PE=3 SV=1
Q5LVV1Sulfopropanediol 3-dehydrogenase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=hpsN PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-LITAF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00815Histidinol_dhHistidinol dehydrogenaseFamilyInterproscan
PF10601zf-LITAF-likeLITAF-like zinc ribbon domainFamilyInterproscan
PF13975gag-asp_proteasgag-polyprotein putative aspartyl proteaseDomainInterproscan
PF00081Sod_Fe_NIron/manganese superoxide dismutases, alpha-hairpin domainDomainInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan
PF13424TPR_12Tetratricopeptide repeatRepeatInterproscan
PF05669Med31SOH1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001692Conserved_siteHistidinol dehydrogenase, conserved siteInterproscan
IPR012131FamilyHistidinol dehydrogenaseInterproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR006629DomainLPS-induced tumour necrosis factor alpha factorInterproscan
IPR037519FamilyLITAF domain containing proteinInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001995DomainPeptidase A2A, retrovirus, catalyticInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR036324Homologous_superfamilyManganese/iron superoxide dismutase, N-terminal domain superfamilyInterproscan
IPR001189FamilyManganese/iron superoxide dismutaseInterproscan
IPR019831DomainManganese/iron superoxide dismutase, N-terminalInterproscan
IPR051728FamilyRING-FYVE domain-containing E3 ubiquitin-protein ligaseInterproscan
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR024812FamilyTetratricopeptide repeat protein 24Interproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR008831FamilyMediator complex, subunit Med31Interproscan
IPR038089Homologous_superfamilyMediator of RNA polymerase II, subunit Med31 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21256HISTIDINOL DEHYDROGENASE HDHInterproscan
PTHR23292LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTORInterproscan
PTHR36943CCHC-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR4359537S RIBOSOMAL PROTEIN S26, MITOCHONDRIALInterproscan
PTHR38337AGAP010540-PAInterproscan
PTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGInterproscan
PTHR47050TETRATRICOPEPTIDE REPEAT PROTEIN 24Interproscan
PTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0000105Biological ProcessL-histidine biosynthetic processInterproscan
GO:0004399Molecular Functionhistidinol dehydrogenase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0004784Molecular Functionsuperoxide dismutase activityInterproscan
GO:0006801Biological Processsuperoxide metabolic processInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070936Biological Processprotein K48-linked ubiquitinationInterproscan
GO:1902042Biological Processnegative regulation of extrinsic apoptotic signaling pathway via death domain receptorsInterproscan
GO:2001271Biological Processobsolete negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosisInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0070847Cellular Componentcore mediator complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20804RNF34; E3 ubiquitin-protein ligase RNF34EC:2.3.2.31
Lysosomeko04142deepkoala
Ubiquitin systemko04121deepkoala

TOP