Detailed information of g398.t2 in Acropora digitifera

Genomic Location: chr1Alt:5478078...5507634
NR annotation: XP_044166542.1, ATP-binding cassette sub-family C member 3-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5F364Multidrug resistance-associated protein 1 OS=Gallus gallus OX=9031 GN=ABCC1 PE=2 SV=1
Q6UR05Multidrug resistance-associated protein 1 OS=Canis lupus familiaris OX=9615 GN=ABCC1 PE=1 SV=1
Q8HXQ5Multidrug resistance-associated protein 1 OS=Bos taurus OX=9913 GN=ABCC1 PE=1 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00005
all species →
ABC_tranABC transporterDomainInterproscan
PF00664
all species →
ABC_membraneABC transporter transmembrane regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003439
all species →
DomainABC transporter-like, ATP-binding domainInterproscan
IPR011527
all species →
DomainABC transporter type 1, transmembrane domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036640
all species →
Homologous_superfamilyABC transporter type 1, transmembrane domain superfamilyInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR017871
all species →
Conserved_siteABC transporter-like, conserved siteInterproscan
IPR050173
all species →
FamilyATP-binding cassette transporter CInterproscan
IPR005292
all species →
FamilyMulti drug resistance-associated proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24223
all species →
ATP-BINDING CASSETTE SUB-FAMILY CInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0140359
all species →
Molecular FunctionABC-type transporter activityInterproscan
GO:0042626
all species →
Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0022857
all species →
Molecular Functiontransmembrane transporter activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05667ABCC3; ATP-binding cassette, subfamily C (CFTR/MRP), member 3-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g398.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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