Gene detail

Detailed information of g4.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBL4617364.1, acetate--CoA ligase [Robiginitomaculum sp.]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q21LV0	Acetyl-coenzyme A synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=acsA PE=3 SV=1
A7HSR8	Acetyl-coenzyme A synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=acsA PE=3 SV=1
B1M0M1	Acetyl-coenzyme A synthetase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=acsA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0000171 (this species only)
Orthogroup (gene family)	OG0000999 (this species only)
Orthogroup (gene family)	OG0001226 (this species only)
Orthogroup (gene family)	OG0001379 (this species only)
Orthogroup (gene family)	OG0005683 (this species only)
Orthogroup (gene family)	OG0007446 (this species only)
Orthogroup (gene family)	OG0015227 (this species only)
Orthogroup (gene family)	OG0021356 (this species only)
Orthogroup (gene family)	OG0032568 (this species only)
Orthogroup (gene family)	OG0048251 (this species only)
Orthogroup (gene family)	OG0059494 (this species only)
Orthogroup (gene family)	OG0173335 (this species only)
Orthogroup (gene family)	OG0173887 (this species only)
Orthogroup (gene family)	OG0174246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF01134 all species →	GIDA	Glucose inhibited division protein A	Family	Interproscan
PF13932 all species →	GIDA_C	tRNA modifying enzyme MnmG/GidA C-terminal helical bundle	Domain	Interproscan
PF21680 all species →	GIDA_C_1st	tRNA modifying enzyme MnmG/GidA C-terminal helical domain	Domain	Interproscan
PF10255 all species →	Paf67	RNA polymerase I-associated factor PAF67	Repeat	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF05721 all species →	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR050182 all species →	Family	Cytochrome P450 family 2	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR020595 all species →	Conserved_site	MnmG-related, conserved site	Interproscan
IPR040131 all species →	Domain	MnmG, N-terminal domain	Interproscan
IPR044920 all species →	Homologous_superfamily	tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR026904 all species →	Domain	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminal	Interproscan
IPR049312 all species →	Domain	tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomain	Interproscan
IPR047001 all species →	Domain	tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain	Interproscan
IPR004416 all species →	Family	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	Interproscan
IPR002218 all species →	Family	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related	Interproscan
IPR019382 all species →	Family	Translation initiation factor 3 complex subunit L	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR008775 all species →	Family	Phytanoyl-CoA dioxygenase-like	Interproscan
IPR047128 all species →	Family	Phytanoyl-CoA dioxygenase	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR011904 all species →	Family	Acetate-CoA ligase	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR24300 all species →	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR11806 all species →	GLUCOSE INHIBITED DIVISION PROTEIN A	Interproscan
PTHR13242 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	Interproscan
PTHR11771 all species →	LIPOXYGENASE	Interproscan
PTHR21308 all species →	PHYTANOYL-COA ALPHA-HYDROXYLASE	Interproscan
PTHR24095 all species →	ACETYL-COENZYME A SYNTHETASE	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006082 all species →	Biological Process	organic acid metabolic process	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0001561 all species →	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0048244 all species →	Molecular Function	phytanoyl-CoA dioxygenase activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003987 all species →	Molecular Function	acetate-CoA ligase activity	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0016208 all species →	Molecular Function	AMP binding	Interproscan
GO:0019427 all species →	Biological Process	acetyl-CoA biosynthetic process from acetate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00461	ALOX5; arachidonate 5-lipoxygenase	EC:1.13.11.34	Toxoplasmosis	ko05145	deepkoala
K01895	ACSS1_2, acs; acetyl-CoA synthetase	EC:6.2.1.1	Lipid biosynthesis proteins	ko01004	deepkoala
K03495	gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme	-	Chromosome and associated proteins	ko03036	deepkoala
K15029	EIF3L; translation initiation factor 3 subunit L	-	Translation factors	ko03012	deepkoala
K17043	DDX43; ATP-dependent RNA helicase DDX43	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.