Detailed information of g4.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBL4617364.1, acetate--CoA ligase [Robiginitomaculum sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q21LV0Acetyl-coenzyme A synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=acsA PE=3 SV=1
A7HSR8Acetyl-coenzyme A synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=acsA PE=3 SV=1
B1M0M1Acetyl-coenzyme A synthetase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=acsA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00013KH_1KH domainDomainInterproscan
PF00067p450Cytochrome P450DomainInterproscan
PF01134GIDAGlucose inhibited division protein AFamilyInterproscan
PF13932GIDA_CtRNA modifying enzyme MnmG/GidA C-terminal helical bundleDomainInterproscan
PF21680GIDA_C_1sttRNA modifying enzyme MnmG/GidA C-terminal helical domainDomainInterproscan
PF10255Paf67RNA polymerase I-associated factor PAF67RepeatInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF00305LipoxygenaseLipoxygenaseDomainInterproscan
PF05721PhyHPhytanoyl-CoA dioxygenase (PhyH)DomainInterproscan
PF00501AMP-bindingAMP-binding enzymeFamilyInterproscan
PF13193AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan
PF00258Flavodoxin_1FlavodoxinDomainInterproscan
PF00667FAD_binding_1FAD binding domainDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR004087DomainK Homology domainInterproscan
IPR050182FamilyCytochrome P450 family 2Interproscan
IPR036396Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR017972Conserved_siteCytochrome P450, conserved siteInterproscan
IPR001128FamilyCytochrome P450Interproscan
IPR002401FamilyCytochrome P450, E-class, group IInterproscan
IPR020595Conserved_siteMnmG-related, conserved siteInterproscan
IPR040131DomainMnmG, N-terminal domainInterproscan
IPR044920Homologous_superfamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamilyInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR026904DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminalInterproscan
IPR049312DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomainInterproscan
IPR047001DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomainInterproscan
IPR004416FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmGInterproscan
IPR002218FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-relatedInterproscan
IPR019382FamilyTranslation initiation factor 3 complex subunit LInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR013819DomainLipoxygenase, C-terminalInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR000907FamilyLipoxygenaseInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR036226Homologous_superfamilyLipoxigenase, C-terminal domain superfamilyInterproscan
IPR008775FamilyPhytanoyl-CoA dioxygenase-likeInterproscan
IPR047128FamilyPhytanoyl-CoA dioxygenaseInterproscan
IPR008254DomainFlavodoxin/nitric oxide synthaseInterproscan
IPR017938Homologous_superfamilyRiboflavin synthase-like beta-barrelInterproscan
IPR045851Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan
IPR000873DomainAMP-dependent synthetase/ligase domainInterproscan
IPR025110DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR029039Homologous_superfamilyFlavoprotein-like superfamilyInterproscan
IPR023173Homologous_superfamilyNADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamilyInterproscan
IPR011904FamilyAcetate-CoA ligaseInterproscan
IPR001094DomainFlavodoxin-likeInterproscan
IPR017927DomainFAD-binding domain, ferredoxin reductase-typeInterproscan
IPR042099Homologous_superfamilyANL, N-terminal domainInterproscan
IPR003097DomainSulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-bindingInterproscan
IPR020845Conserved_siteAMP-binding, conserved siteInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR24300CYTOCHROME P450 508A4-RELATEDInterproscan
PTHR11806GLUCOSE INHIBITED DIVISION PROTEIN AInterproscan
PTHR13242EUKARYOTIC TRANSLATION INITIATION FACTOR 3Interproscan
PTHR11771LIPOXYGENASEInterproscan
PTHR21308PHYTANOYL-COA ALPHA-HYDROXYLASEInterproscan
PTHR24095ACETYL-COENZYME A SYNTHETASEInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006082Biological Processorganic acid metabolic processInterproscan
GO:0006805Biological Processxenobiotic metabolic processInterproscan
GO:0016712Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygenInterproscan
GO:0020037Molecular Functionheme bindingInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complexInterproscan
GO:0006413Biological Processtranslational initiationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0034440Biological Processlipid oxidationInterproscan
GO:0001561Biological Processfatty acid alpha-oxidationInterproscan
GO:0048244Molecular Functionphytanoyl-CoA dioxygenase activityInterproscan
GO:0010181Molecular FunctionFMN bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0003987Molecular Functionacetate-CoA ligase activityInterproscan
GO:0006085Biological Processacetyl-CoA biosynthetic processInterproscan
GO:0016208Molecular FunctionAMP bindingInterproscan
GO:0019427Biological Processacetyl-CoA biosynthetic process from acetateInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03495gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme-Lipid biosynthesis proteinsko01004deepkoala
Translation factorsko03012deepkoala
Toxoplasmosisko05145deepkoala
Spliceosomeko03041deepkoala
Chromosome and associated proteinsko03036deepkoala

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