Gene detail

Detailed information of g40.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_087110640.1, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Parendozoicomonas haliclonae]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P73138	S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=frmA PE=3 SV=1
P39450	S-(hydroxymethyl)glutathione dehydrogenase OS=Photobacterium damsela subsp. piscicida OX=38294 GN=frmA PE=3 SV=1
A2XAZ3	Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica OX=39946 GN=ADHIII PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000080 (this species only)
Orthogroup (gene family)	OG0000197 (this species only)
Orthogroup (gene family)	OG0000840 (this species only)
Orthogroup (gene family)	OG0001029 (this species only)
Orthogroup (gene family)	OG0002102 (this species only)
Orthogroup (gene family)	OG0002809 (this species only)
Orthogroup (gene family)	OG0003335 (this species only)
Orthogroup (gene family)	OG0017066 (this species only)
Orthogroup (gene family)	OG0023236 (this species only)
Orthogroup (gene family)	OG0059720 (this species only)
Orthogroup (gene family)	OG0171257 (this species only)
Orthogroup (gene family)	OG0171383 (this species only)
Orthogroup (gene family)	OG0171589 (this species only)
Orthogroup (gene family)	OG0171805 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04729 all species →	ASF1_hist_chap	ASF1 like histone chaperone	Family	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03732 all species →	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF16455 all species →	UBD	Ubiquitin-binding domain	Domain	Interproscan
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF17789 all species →	MG4	Macroglobulin domain MG4	Domain	Interproscan
PF07703 all species →	A2M_BRD	Alpha-2-macroglobulin bait region domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR006818 all species →	Family	Histone chaperone ASF1-like	Interproscan
IPR036747 all species →	Homologous_superfamily	Histone chaperone ASF1-like superfamily	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050705 all species →	Family	Cytochrome P450 3A	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR043544 all species →	Family	Sorting nexin-10/11	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR040108 all species →	Family	Laa1/Sip1/HEATR5	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005162 all species →	Domain	Retrotransposon gag domain	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR032752 all species →	Domain	DC-UbP/UBTD2, N-terminal domain	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050473 all species →	Family	Alpha-2-macroglobulin/Complement system	Interproscan
IPR040839 all species →	Domain	Macroglobulin domain MG4	Interproscan
IPR011625 all species →	Domain	Alpha-2-macroglobulin, bait region domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24302 all species →	CYTOCHROME P450 FAMILY 3	Interproscan
PTHR46209 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21663 all species →	HYPOTHETICAL HEAT DOMAIN-CONTAINING	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR33064 all species →	POL PROTEIN	Interproscan
PTHR22930 all species →	UNCHARACTERIZED	Interproscan
PTHR43880 all species →	ALCOHOL DEHYDROGENASE	Interproscan
PTHR11412 all species →	MACROGLOBULIN / COMPLEMENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0008395 all species →	Molecular Function	steroid hydroxylase activity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0004024 all species →	Molecular Function	obsolete alcohol dehydrogenase (NAD+) activity, zinc-dependent	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046294 all species →	Biological Process	formaldehyde catabolic process	Interproscan
GO:0051903 all species →	Molecular Function	S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g40.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.