Detailed information of g400.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KXJ14575.1, Ubiquitin-like-specific protease 1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9DCF9Translocon-associated protein subunit gamma OS=Mus musculus OX=10090 GN=Ssr3 PE=1 SV=1
Q08013Translocon-associated protein subunit gamma OS=Rattus norvegicus OX=10116 GN=Ssr3 PE=1 SV=2
Q3SZ87Translocon-associated protein subunit gamma OS=Bos taurus OX=9913 GN=SSR3 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF07074TRAP-gammaTranslocon-associated protein, gamma subunit (TRAP-gamma)FamilyInterproscan
PF12775AAA_7P-loop containing dynein motor regionDomainInterproscan
PF17852Dynein_AAA_lidDynein heavy chain AAA lid domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF01064Activin_recpActivin types I and II receptor domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR009779FamilyTranslocon-associated protein subunit gammaInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000358FamilyRibonucleotide reductase small subunit familyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041466DomainDynein heavy chain, AAA 5 extension domainInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR034229DomaineIF4H, RNA recognition motifInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000333FamilySer/Thr protein kinase, TGFB receptorInterproscan
IPR045860Homologous_superfamilySnake toxin-like superfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR000472DomainActivin types I and II receptor domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45838HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBERInterproscan
PTHR47456PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13399TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNITInterproscan
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR23409RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAINInterproscan
PTHR35362ANK_REP_REGION DOMAIN-CONTAINING PROTEINInterproscan
PTHR22878UNCHARACTERIZEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4HInterproscan
PTHR23255TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND IIInterproscan
PTHR33064POL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0035097Cellular Componenthistone methyltransferase complexInterproscan
GO:0042800Molecular Functionhistone H3K4 methyltransferase activityInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0051568Biological Processobsolete histone H3-K4 methylationInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004748Molecular Functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptorInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009263Biological Processdeoxyribonucleotide biosynthetic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0004675Molecular Functiontransmembrane receptor protein serine/threonine kinase activityInterproscan
GO:0005024Molecular Functiontransforming growth factor beta receptor activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0007178Biological Processcell surface receptor protein serine/threonine kinase signaling pathwayInterproscan
GO:0030509Biological ProcessBMP signaling pathwayInterproscan
GO:0043235Cellular Componentreceptor complexInterproscan
GO:0071363Biological Processcellular response to growth factor stimulusInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10371TNNI1; troponin I, slow skeletal muscle-Membrane traffickingko04131deepkoala
Translation factorsko03012deepkoala
Ubiquitin systemko04121deepkoala
Cytoskeleton proteinsko04812deepkoala

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