Genomic Location: not available for this species
NR annotation: XP_022802856.1, ribonuclease P protein subunit p29-like isoform X2 [Stylophora pistillata]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q2KIB9 | Ribonuclease P protein subunit p29 OS=Bos taurus OX=9913 GN=POP4 PE=2 SV=1 |
| Q5R7B0 | Ribonuclease P protein subunit p29 OS=Pongo abelii OX=9601 GN=POP4 PE=2 SV=1 |
| O95707 | Ribonuclease P protein subunit p29 OS=Homo sapiens OX=9606 GN=POP4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000014 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000088 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000198 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002019 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005438 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007337 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007530 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008013 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009333 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012138 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0022260 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0042286 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01868 all species → | RNase_P-MRP_p29 | Ribonuclease P/MRP, subunit p29 | Family | Interproscan |
| PF21549 all species → | PRDM2_PR | PR domain zinc finger protein 2, PR domain | Domain | Interproscan |
| PF00789 all species → | UBX | UBX domain | Domain | Interproscan |
| PF06201 all species → | PITH | PITH domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00227 all species → | Proteasome | Proteasome subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017868 all species → | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR036514 all species → | Homologous_superfamily | SGNH hydrolase superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR016848 all species → | Family | Ribonuclease P/MRP subunit Rpp29 | Interproscan |
| IPR036980 all species → | Homologous_superfamily | Ribonuclease P/MRP subunit Rpp29 superfamily | Interproscan |
| IPR002730 all species → | Family | Ribonuclease P protein subunit Rpp29/RNP1 | Interproscan |
| IPR023534 all species → | Homologous_superfamily | Rof/RNase P-like | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR006553 all species → | Repeat | Leucine-rich repeat, cysteine-containing subtype | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR051341 all species → | Family | Zyg-11-related ubiquitin ligase adapter protein | Interproscan |
| IPR001012 all species → | Domain | UBX domain | Interproscan |
| IPR037047 all species → | Homologous_superfamily | PITH domain superfamily | Interproscan |
| IPR010400 all species → | Domain | PITH domain | Interproscan |
| IPR045099 all species → | Family | PITH domain-containing protein 1-like | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR001353 all species → | Family | Proteasome, subunit alpha/beta | Interproscan |
| IPR029055 all species → | Homologous_superfamily | Nucleophile aminohydrolases, N-terminal | Interproscan |
| IPR023333 all species → | Family | Proteasome B-type subunit | Interproscan |
| IPR000243 all species → | Family | Peptidase T1A, proteasome beta-subunit | Interproscan |
| IPR016050 all species → | Conserved_site | Proteasome beta-type subunit, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16165 all species → | NXPE FAMILY MEMBER | Interproscan |
| PTHR47018 all species → | CXC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR13348 all species → | RIBONUCLEASE P SUBUNIT P29 | Interproscan |
| PTHR34407 all species → | EXPRESSED PROTEIN | Interproscan |
| PTHR12904 all species → | - | Interproscan |
| PTHR12175 all species → | AD039 HT014 THIOREDOXIN FAMILY TRP26 | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR32194 all species → | METALLOPROTEASE TLDD | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000172 all species → | Cellular Component | ribonuclease MRP complex | Interproscan |
| GO:0001682 all species → | Biological Process | tRNA 5'-leader removal | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0030677 all species → | Cellular Component | ribonuclease P complex | Interproscan |
| GO:0033204 all species → | Molecular Function | ribonuclease P RNA binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005839 all species → | Cellular Component | proteasome core complex | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
| GO:0004298 all species → | Molecular Function | threonine-type endopeptidase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02738 | PSMB6; 20S proteasome subunit beta 1 | EC:3.4.25.1 | Proteasome | ko03051 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
