Detailed information of g402.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002737952.1, PREDICTED: guanine nucleotide exchange factor MSS4-like isoform X1 [Saccoglossus kowalevskii]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P47224Guanine nucleotide exchange factor MSS4 OS=Homo sapiens OX=9606 GN=RABIF PE=1 SV=2
Q91X96Guanine nucleotide exchange factor MSS4 OS=Mus musculus OX=10090 GN=Rabif PE=1 SV=1
Q08326Guanine nucleotide exchange factor MSS4 OS=Rattus norvegicus OX=10116 GN=Rabif PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01344Kelch_1Kelch motifRepeatInterproscan
PF00106adh_shortshort chain dehydrogenaseDomainInterproscan
PF07562NCD3GNine Cysteines Domain of family 3 GPCRFamilyInterproscan
PF000037tm_37 transmembrane sweet-taste receptor of 3 GCPRDomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF18118PRC2_HTH_1Polycomb repressive complex 2 tri-helical domainDomainInterproscan
PF15951MITF_TFEB_C_3_NMITF/TFEB/TFEC/TFE3 N-terminusFamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF04421Mss4Mss4 proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033195FamilyGlycine/inosamine-phosphate amidinotransferaseInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR002347FamilyShort-chain dehydrogenase/reductase SDRInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR000337FamilyGPCR, family 3Interproscan
IPR011500DomainGPCR, family 3, nine cysteines domainInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR017978DomainGPCR family 3, C-terminalInterproscan
IPR038550Homologous_superfamilyGPCR, family 3, nine cysteines domain superfamilyInterproscan
IPR050726FamilyMetabotropic Glutamate ReceptorInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR041343DomainPolycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR031867DomainMiT/TFE transcription factors, N-terminalInterproscan
IPR011323Homologous_superfamilyMss4/translationally controlled tumour-associated TCTPInterproscan
IPR007515FamilyMss4Interproscan
IPR011057Homologous_superfamilyMss4-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10488GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIALInterproscan
PTHR45632LD33804PInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR31424PROTEIN CBG23806Interproscan
PTHR24322PKSBInterproscan
PTHR24060METABOTROPIC GLUTAMATE RECEPTORInterproscan
PTHR45776MIP04163PInterproscan
PTHR13276GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0015067Molecular Functionamidinotransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005811Cellular Componentlipid dropletInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0001640Molecular Functionadenylate cyclase inhibiting G protein-coupled glutamate receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007216Biological ProcessG protein-coupled glutamate receptor signaling pathwayInterproscan
GO:0051966Biological Processregulation of synaptic transmission, glutamatergicInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006892Biological Processpost-Golgi vesicle-mediated transportInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00613GATM; glycine amidinotransferaseEC:2.1.4.1
Membrane traffickingko04131deepkoala
Retinol metabolismko00830deepkoala
Arginine and proline metabolismko00330deepkoala

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