Gene detail

Detailed information of g403.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH1788756.1, unnamed protein product, partial [Owenia fusiformis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DR7	Dynactin subunit 6 OS=Xenopus tropicalis OX=8364 GN=dctn6 PE=2 SV=1
A7SGU3	Dynactin subunit 6 OS=Nematostella vectensis OX=45351 GN=dctn6 PE=3 SV=1
Q148G7	Dynactin subunit 6 OS=Bos taurus OX=9913 GN=DCTN6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000047 (this species only)
Orthogroup (gene family)	OG0000075 (this species only)
Orthogroup (gene family)	OG0001220 (this species only)
Orthogroup (gene family)	OG0002172 (this species only)
Orthogroup (gene family)	OG0002878 (this species only)
Orthogroup (gene family)	OG0003908 (this species only)
Orthogroup (gene family)	OG0005235 (this species only)
Orthogroup (gene family)	OG0006632 (this species only)
Orthogroup (gene family)	OG0007242 (this species only)
Orthogroup (gene family)	OG0008268 (this species only)
Orthogroup (gene family)	OG0009407 (this species only)
Orthogroup (gene family)	OG0059563 (this species only)
Orthogroup (gene family)	OG0080314 (this species only)
Orthogroup (gene family)	OG0172495 (this species only)
Transcription factor family	ZBTB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00233 all species →	PDEase_I	3'5'-cyclic nucleotide phosphodiesterase	Domain	Interproscan
PF16317 all species →	Glyco_hydro_99	Glycosyl hydrolase family 99	Domain	Interproscan
PF02225 all species →	PA	PA domain	Family	Interproscan
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan
PF03357 all species →	Snf7	Snf7	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF19420 all species →	DDAH_eukar	N,N dimethylarginine dimethylhydrolase, eukaryotic	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR027777 all species →	Family	Dynactin subunit 6	Interproscan
IPR023174 all species →	Conserved_site	3'5'-cyclic nucleotide phosphodiesterase, conserved site	Interproscan
IPR002073 all species →	Domain	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR036971 all species →	Homologous_superfamily	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily	Interproscan
IPR023088 all species →	Family	3'5'-cyclic nucleotide phosphodiesterase	Interproscan
IPR026071 all species →	Family	Glycosyl hydrolase family 99	Interproscan
IPR044674 all species →	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan
IPR005024 all species →	Family	Snf7 family	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR033199 all species →	Family	Dimethylarginine dimethylaminohydrolase-like	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13072 all species →	DYNACTIN 6	Interproscan
PTHR11347 all species →	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Interproscan
PTHR13572 all species →	ENDO-ALPHA-1,2-MANNOSIDASE	Interproscan
PTHR45679 all species →	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan
PTHR10476 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12737 all species →	DIMETHYLARGININE DIMETHYLAMINOHYDROLASE	Interproscan
PTHR46585 all species →	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan
PTHR33327 all species →	ENDONUCLEASE	Interproscan
PTHR24412 all species →	KELCH PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0070840 all species →	Molecular Function	dynein complex binding	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004114 all species →	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0046069 all species →	Biological Process	cGMP catabolic process	Interproscan
GO:0047555 all species →	Molecular Function	3',5'-cyclic-GMP phosphodiesterase activity	Interproscan
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904380 all species →	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0000815 all species →	Cellular Component	ESCRT III complex	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0032509 all species →	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan
GO:0000052 all species →	Biological Process	citrulline metabolic process	Interproscan
GO:0006525 all species →	Biological Process	arginine metabolic process	Interproscan
GO:0016403 all species →	Molecular Function	dimethylargininase activity	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0045429 all species →	Biological Process	positive regulation of nitric oxide biosynthetic process	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01482	DDAH, ddaH; dimethylargininase	EC:3.5.3.18	Exosome	ko04147	deepkoala
K10428	DCTN6; dynactin 6	-	Cytoskeleton proteins	ko04812	deepkoala
K12193	VPS24, CHMP3; charged multivesicular body protein 3	-	Exosome	ko04147	deepkoala
K13761	PDE9; high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9	EC:3.1.4.35	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.