Gene detail

Detailed information of g40352.t1.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3181531.1, unnamed protein product, partial [Porites lobata]
Species abbreviation DCRIB · all data for this species · gene families

Sequence

CDS

g40352.t1

ATGGCTGCCTCCTCTGGTCAGCAACCTGAACCTGACAGAGTGGGAGCAAGATGGAACATTGCCAGTTCAGCTTCTCAAAAGGCTAATTGTCCTGATATCAGCATCCCAGCCACACCACAAGAAGTGAATATACCTGGAAAAGACACCGGGCCAACTCTGAAAGTTACTCTTCTTGGTAGTGAGTGGAATTCATCTGCTGGTGGTTTGTCAACATTAAACAGAGAGCTTGCCATTCACCTTTCAAAACATCCCAAAGTGGAAGTATCCCTGTTAGTCCCAGAGGGAGCTTGTAAAGATGTGGAAAAAAGAGAAGCTCAGAGTTTTGGAATTACTGTTGTTGATGCAAAGGAACGCCCAGGCTTCGACCCTCTTGATTGGTTAAGCTTCCCACCTGAGCACCTCAGCATGAATATTGTTGTTGGCCATGGTGTGAAACTTGGCCGGCAAGGTCAAGTGATAAGAGACTCGGCTCAATTTCCAAATTGTAAGTGGGTTCAAGTGGTTCATACCGCTCCAGAAGATCTTAGCAGGTACAAAACCTATGCTGACCCCATTTCGAAAGGTGAAAGGAAACATGAAGTTGAAGTTGAGCTTTGTAAACTCGCTGATCTTGTTGTACCTGTTGGGCCCAGATTGAAAGAGGCTTACTCTTCATATTTACGACGGAGTAAGACAGATCAAGATGTTCTTTCAGTCACCCCAGGACTTTTTGATAGGGAGTTTGGAGATTTAAAACAAACTCCTAATGAGAATGCCGAGTTCAAGGTGTTGTTATGTGGTCGTGGTGATGATGAGGACTTCGAGTTAAAGGGTTACAATATTGCTGTGAAGGCATTTACTAGTCAGCAGCTCAAAAGGAAACCTTATCATCTTTTGTTTGTGGGTGCTCCCAAAGGAAATCAAGAAGAAGTAAGACAAAAGCTTCTCCAAAGTGGCATTGCTGTAGATCAGCTGACTGTCAGAAGCTACATCCAATGCAGGGACAAGCTGAAAGACCTATTCTGTGAAGTCGACCTTGCGATCATGCCATCCAAAACAGAAGGATTTGGTCTGGTTGCTCTTGAAGCCTTGTCTGCTGGTTTACCCATTCTTGTGGGAAGTAAATCAGGATTTGCCAAAGCATTAGAGAATATTTCGTTTGGAAAATCATGCATAGTTAATTCAGATGATCCTACAAAGTGGGCTGAAGCCATTGAAGCTGTTCGTGCTGAACACAGAATGCATCTTGAAGAGATCAAAGCACTGAAAGTGTGCTACGAAAAGCAGTACAGCTGGAAGGAACAATGTGAAGCTCTTGCAGAAAAGATGTGGAAAATGGTTCATGAGCCTGTTGTTGGTTTACAAGATGTAGTTGAAGAGCAACCTTTTGCAGAGTCGGGAGTTCTAGAGGCAGTTAGCAAGCCTTGTTCAGTTCAACAAATTCGGAACATTGAAGAAAAGGAAGTTTCTGGAACAAATGAAGAAACAATGACTTGGCGCAAAAATTCTTGTAAGAGGTCAAGAAGTATTACAGAATCCACCTTTGATTCAGAAACTGGTAAAGTTGATGACGATGGATGCAAAATGGAATTAACCATTGATCCTGAAGACTTCCTGGGAGACAAAGCCAATGCTCTCGGTCCATGTGAGCTTAAACTCAGGGAATATCAGAAGGAACTGGCTGAACCAGCGATCCAAGGAAAAAACAGCATCATCTGTGCGCCCACAAACAGTGGGAAAACTTATGTGGCCATAGAAATAACAAAACGTCACCTCGATTCGTTTACAAGCGACGACTCAGACCAGTCAGATACGCCAGCTGCCAGCAGTACTTGTACCGAGAGAAAAAAAGGACGAGTGGTGTTTATTGTCAGCACAGTGAACCTTGTTCTACAGCAGAAGGAGCGATTTGGGAAGTTCCTGGACGGTAAATATTCTGTGGGAGAAATCTCTGGAGCCAACGCAACAGATATCCCCCTTAAGTACCTCCTAAAAAATCACAGTGTTGTTGTGATGACGGCGCAGATACTTGTTAACGCCCTAAATAGCGAAAACAAAACGGAACGAGTGGAGCTGAAAGACATCAGTCTGTTGTTATTTGATGAATGCCACCATGCTCATAAAGAACATCCGTACAACAGCATTATGGAAAAGTATCTCGCTTTGAAGTTCCAGCCAGGATACCGGCACAGCTTGCCACAGATCATCGGCCTGACAGCCTCTCTTGGTACTGGAAAAGCACAGAGTGTGGAGAAAGCGGAAGAACATATTATTCTTGTGTCTGCAAATTTGGATGCTGAAGTTATCTCAACCGTCCAAAAAAATAAGGCCGAGCTTGAAAAGTTTGTTTTCGTACCTTCACAAAAAATATATcctgtagaaaaaaaaaacgaagatCCATTTGAAAAGATCATCTCCAAGGTAACTTTAGATAGTGAAGAGTTACCTTGCttgcaacctcgtccccagggctttttccgcgttcaaaatggcgggcttAGTAACCATGgacaaagctgccaaaatacttCAAACATCCTGGAGTGTTTTGTCGCGTAA

Transcript

g40352.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Q9GLV6	Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g40352.t1.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.