Detailed information of g408.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: ETE65653.1, Rho guanine nucleotide exchange factor 12, partial [Ophiophagus hannah]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9NZN5Rho guanine nucleotide exchange factor 12 OS=Homo sapiens OX=9606 GN=ARHGEF12 PE=1 SV=1
Q8R4H2Rho guanine nucleotide exchange factor 12 OS=Mus musculus OX=10090 GN=Arhgef12 PE=1 SV=2
O15085Rho guanine nucleotide exchange factor 11 OS=Homo sapiens OX=9606 GN=ARHGEF11 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyULD|UFD|RAWUL
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM
Ubiquitin FamilyDUB|USP|USP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16207RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF19718USP47_CUbiquitin carboxyl-terminal hydrolase 47 C-terminalDomainInterproscan
PF00443UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF05649Peptidase_M13_NPeptidase family M13FamilyInterproscan
PF01431Peptidase_M13Peptidase family M13FamilyInterproscan
PF01255PrenyltransfPutative undecaprenyl diphosphate synthaseFamilyInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF13847Methyltransf_31Methyltransferase domainDomainInterproscan
PF01756ACOXAcyl-CoA oxidaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR051507FamilyPolycomb group RING fingerInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR032443DomainRAWUL domainInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR001478DomainPDZ domainInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR018200Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR045578DomainUbiquitin carboxyl-terminal hydrolase 47, C-terminalInterproscan
IPR001394DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR050164FamilyUbiquitin carboxyl-terminal hydrolasesInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR042089Homologous_superfamilyPeptidase M13, domain 2Interproscan
IPR018497DomainPeptidase M13, C-terminal domainInterproscan
IPR000718FamilyPeptidase M13Interproscan
IPR008753DomainPeptidase M13, N-terminal domainInterproscan
IPR001441FamilyDecaprenyl diphosphate synthase-likeInterproscan
IPR036424Homologous_superfamilyDecaprenyl diphosphate synthase-like superfamilyInterproscan
IPR050836FamilySDS22/Internalin LRR-containingInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR051419FamilyLysine/N-terminal Methyltransferase SuperfamilyInterproscan
IPR025714DomainMethyltransferase domainInterproscan
IPR002655DomainAcyl-CoA oxidase, C-terminalInterproscan
IPR036250Homologous_superfamilyAcyl-CoA dehydrogenase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45893POLYCOMB GROUP RING FINGER PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR45872RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM DInterproscan
PTHR24006UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan
PTHR11733ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATEDInterproscan
PTHR10291DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBERInterproscan
PTHR46652LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATEDInterproscan
PTHR12176SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0035102Cellular ComponentPRC1 complexInterproscan
GO:0036353Biological Processobsolete histone H2A-K119 monoubiquitinationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001664Molecular FunctionG protein-coupled receptor bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0016765Molecular Functiontransferase activity, transferring alkyl or aryl (other than methyl) groupsInterproscan
GO:0002094Molecular Functionpolyprenyltransferase activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0016094Biological Processpolyprenol biosynthetic processInterproscan
GO:0045547Molecular Functiondehydrodolichyl diphosphate synthase activityInterproscan
GO:1904423Cellular Componentdehydrodolichyl diphosphate synthase complexInterproscan
GO:0003997Molecular Functionacyl-CoA oxidase activityInterproscan
GO:0005777Cellular ComponentperoxisomeInterproscan
GO:0006635Biological Processfatty acid beta-oxidationInterproscan
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03521fixA, etfB; electron transfer flavoprotein beta subunit-Cytoskeleton proteinsko04812deepkoala
Ubiquitin systemko04121deepkoala
Chromosome and associated proteinsko03036deepkoala
Energy metabolism-deepkoala

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